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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwFormaldehyde_C1
Anticodon = CGA
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.12524 (14 seq.)
>W1711410053
MGPO01000038
Unclassified
Deltaproteobacteria bacterium GWA2_65_63 [MGPO]
8275
8183
-
Ser
CGA
[ENA]
¡û
>W1711410171
MGPR01000044
Unclassified
Deltaproteobacteria bacterium GWB2_65_81 [MGPR]
7703
7611
-
Ser
CGA
[ENA]
¡û
>W1711410320
MGPV01000062
Unclassified
Deltaproteobacteria bacterium GWC2_65_14 [MGPV]
35224
35316
+
Ser
CGA
[ENA]
¡û
>W1711410331
MGPW01000017
Unclassified
Deltaproteobacteria bacterium GWC2_66_88 [MGPW]
7704
7612
-
Ser
CGA
[ENA]
¡û
>W1711584273
MNYH01000037
Unclassified
Deltaproteobacteria bacterium CG2_30_66_27 [MNYH]
13413
13505
+
Ser
CGA
[ENA]
¡û
>WENV180275185
OBHS01040161
[OBHS] metagenome; freshwater sediment
139
47
-
Ser
CGA
[ENA]
¢þ
>WENV180351799
OBLQ010106980
[OBLQ] soil metagenome; soil
130
38
-
Ser
CGA
[ENA]
¢þ
>WENV180372373
OBOI01064302
[OBOI] sediment metagenome; sediment
520
612
+
Ser
CGA
[ENA]
¢þ
>WENV183662911
ORJL010237730
[ORJL] groundwater metagenome; groundwater
94
2
-
Ser
CGA
[ENA]
¢þ
>WENV183677969
ORJL011818440
[ORJL] groundwater metagenome; groundwater
530
622
+
Ser
CGA
[ENA]
¢þ
>WENV183682388
ORMF010432274
[ORMF] groundwater metagenome; groundwater
158
65
-
Ser
CGA
[ENA]
¢þ
>ENV09000090
ABSN01007429
Freshwater sediment metagenome lwFormaldehyde_C1
392
300
-
Ser
CGA
[ENA]
¡û
>W1610594145
LDXO01000007
Unclassified
Deltaproteobacteria bacterium CSP1-8 [LDXO]
97555
97647
+
Ser
CGA
[ENA]
¡û
>W1710713597
LDXO01000007
Unclassified
Deltaproteobacteria bacterium CSP1-8 [LDXO]
97555
97647
+
Ser
CGA
[ENA]
¡û
Identical group No.19648 (1 seq.)
>ENV09000270
ABSN01042046
Freshwater sediment metagenome lwFormaldehyde_C1
108
200
+
Ser
CGA
[ENA]
¡û
Identical group No.30022 (1 seq.)
>ENV09000284
ABSN01044332
Freshwater sediment metagenome lwFormaldehyde_C1
174
83
-
Ser
CGA
[ENA]
¡û
Identical group No.50796 (6 seq.)
>W131166451
ARCM01000002
Alphaproteobacteria
Ancylobacter sp. FA202 [ARCM]
986095
986184
+
Ser
CGA
[ENA]
¡û
>W131175693
ARJL01000003
Alphaproteobacteria
Xanthobacteraceae bacterium 501b [ARJL]
4092677
4092588
-
Ser
CGA
[ENA]
¡û
>W141733751
JNLC01000015
Alphaproteobacteria
Bosea sp. 117 [JNLC]
368965
368876
-
Ser
CGA
[ENA]
¡û
>ENV09000452
ABSN01071660
Freshwater sediment metagenome lwFormaldehyde_C1
529
440
-
Ser
CGA
[ENA]
¡û
>W1710505328
FMTP01000016
Alphaproteobacteria
Ancylobacter rudongensis [FMTP]
11164
11253
+
Ser
CGA
[ENA]
¡û
>W1710600359
FUWJ01000002
Alphaproteobacteria
Enhydrobacter aerosaccus [FUWJ]
479793
479704
-
Ser
CGA
[ENA]
¡û
Identical group No.69659 (2 seq.)
>WENV180259500
OBEQ011108596
[OBEQ] groundwater metagenome; groundwater
637
725
+
Ser
CGA
[ENA]
¢þ
>ENV09000042
ABSN01001976
Freshwater sediment metagenome lwFormaldehyde_C1
791
704
-
Ser
CGA
[ENA]
¡û
Identical group No.72026 (1 seq.)
>ENV09000118
ABSN01013705
Freshwater sediment metagenome lwFormaldehyde_C1
59
148
+
Ser
CGA
[ENA]
¡û
Identical group No.72029 (1 seq.)
>ENV09000275
ABSN01042428
Freshwater sediment metagenome lwFormaldehyde_C1
184
273
+
Ser
CGA
[ENA]
¡û
Identical group No.91389 (10 seq.)
>WENV181359225
OFMW01000659
[OFMW] sediment metagenome; Lake sediment
928
842
-
Ser
CGA
[ENA]
¢þ
>WENV181360818
OFNB01001199
[OFNB] sediment metagenome; Lake sediment
283
197
-
Ser
CGA
[ENA]
¢þ
>WENV181360975
OFNE01001861
[OFNE] sediment metagenome; Lake sediment
271
185
-
Ser
CGA
[ENA]
¢þ
>WENV181361013
OFNF01000698
[OFNF] sediment metagenome; Lake sediment
62
148
+
Ser
CGA
[ENA]
¢þ
>WENV181361449
OFNX01000675
[OFNX] sediment metagenome; Lake sediment
198
284
+
Ser
CGA
[ENA]
¢þ
>WENV181361770
OFOI01000139
[OFOI] sediment metagenome; Lake sediment
187
273
+
Ser
CGA
[ENA]
¢þ
>WENV181363182
OFOT01001804
[OFOT] sediment metagenome; Lake sediment
399
313
-
Ser
CGA
[ENA]
¢þ
>WENV183702747
PDVJ01000016
[PDVJ] alkali sediment metagenome; glacial lake sediment
39689
39775
+
Ser
CGA
[ENA]
¢þ
>At0671
CP000780
Euryarchaeota
Methanoregula boonei 6A8 [CP000780]
2466900
2466984
+
Ser
CGA
[Ensembl]
¡û
>ENV09000431
ABSN01068318
Freshwater sediment metagenome lwFormaldehyde_C1
110
24
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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