tRNA genes clustered and arranged according to each identical group

Freshwater sediment metagenome lwFormaldehyde_C1

Anticodon = CGA

HIT: 8 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.12524 (14 seq.)
>W1711410053 MGPO01000038 Unclassified Deltaproteobacteria bacterium GWA2_65_63 [MGPO] 8275 8183 - Ser CGA [ENA] ¡û
>W1711410171 MGPR01000044 Unclassified Deltaproteobacteria bacterium GWB2_65_81 [MGPR] 7703 7611 - Ser CGA [ENA] ¡û
>W1711410320 MGPV01000062 Unclassified Deltaproteobacteria bacterium GWC2_65_14 [MGPV] 35224 35316 + Ser CGA [ENA] ¡û
>W1711410331 MGPW01000017 Unclassified Deltaproteobacteria bacterium GWC2_66_88 [MGPW] 7704 7612 - Ser CGA [ENA] ¡û
>W1711584273 MNYH01000037 Unclassified Deltaproteobacteria bacterium CG2_30_66_27 [MNYH] 13413 13505 + Ser CGA [ENA] ¡û
>WENV180275185 OBHS01040161 [OBHS] metagenome; freshwater sediment 139 47 - Ser CGA [ENA] ¢þ
>WENV180351799 OBLQ010106980 [OBLQ] soil metagenome; soil 130 38 - Ser CGA [ENA] ¢þ
>WENV180372373 OBOI01064302 [OBOI] sediment metagenome; sediment 520 612 + Ser CGA [ENA] ¢þ
>WENV183662911 ORJL010237730 [ORJL] groundwater metagenome; groundwater 94 2 - Ser CGA [ENA] ¢þ
>WENV183677969 ORJL011818440 [ORJL] groundwater metagenome; groundwater 530 622 + Ser CGA [ENA] ¢þ
>WENV183682388 ORMF010432274 [ORMF] groundwater metagenome; groundwater 158 65 - Ser CGA [ENA] ¢þ
>ENV09000090 ABSN01007429 Freshwater sediment metagenome lwFormaldehyde_C1 392 300 - Ser CGA [ENA] ¡û
>W1610594145 LDXO01000007 Unclassified Deltaproteobacteria bacterium CSP1-8 [LDXO] 97555 97647 + Ser CGA [ENA] ¡û
>W1710713597 LDXO01000007 Unclassified Deltaproteobacteria bacterium CSP1-8 [LDXO] 97555 97647 + Ser CGA [ENA] ¡û
Identical group No.19648 (1 seq.)
>ENV09000270 ABSN01042046 Freshwater sediment metagenome lwFormaldehyde_C1 108 200 + Ser CGA [ENA] ¡û
Identical group No.30022 (1 seq.)
>ENV09000284 ABSN01044332 Freshwater sediment metagenome lwFormaldehyde_C1 174 83 - Ser CGA [ENA] ¡û
Identical group No.50796 (6 seq.)
>W131166451 ARCM01000002 Alphaproteobacteria Ancylobacter sp. FA202 [ARCM] 986095 986184 + Ser CGA [ENA] ¡û
>W131175693 ARJL01000003 Alphaproteobacteria Xanthobacteraceae bacterium 501b [ARJL] 4092677 4092588 - Ser CGA [ENA] ¡û
>W141733751 JNLC01000015 Alphaproteobacteria Bosea sp. 117 [JNLC] 368965 368876 - Ser CGA [ENA] ¡û
>ENV09000452 ABSN01071660 Freshwater sediment metagenome lwFormaldehyde_C1 529 440 - Ser CGA [ENA] ¡û
>W1710505328 FMTP01000016 Alphaproteobacteria Ancylobacter rudongensis [FMTP] 11164 11253 + Ser CGA [ENA] ¡û
>W1710600359 FUWJ01000002 Alphaproteobacteria Enhydrobacter aerosaccus [FUWJ] 479793 479704 - Ser CGA [ENA] ¡û
Identical group No.69659 (2 seq.)
>WENV180259500 OBEQ011108596 [OBEQ] groundwater metagenome; groundwater 637 725 + Ser CGA [ENA] ¢þ
>ENV09000042 ABSN01001976 Freshwater sediment metagenome lwFormaldehyde_C1 791 704 - Ser CGA [ENA] ¡û
Identical group No.72026 (1 seq.)
>ENV09000118 ABSN01013705 Freshwater sediment metagenome lwFormaldehyde_C1 59 148 + Ser CGA [ENA] ¡û
Identical group No.72029 (1 seq.)
>ENV09000275 ABSN01042428 Freshwater sediment metagenome lwFormaldehyde_C1 184 273 + Ser CGA [ENA] ¡û
Identical group No.91389 (10 seq.)
>WENV181359225 OFMW01000659 [OFMW] sediment metagenome; Lake sediment 928 842 - Ser CGA [ENA] ¢þ
>WENV181360818 OFNB01001199 [OFNB] sediment metagenome; Lake sediment 283 197 - Ser CGA [ENA] ¢þ
>WENV181360975 OFNE01001861 [OFNE] sediment metagenome; Lake sediment 271 185 - Ser CGA [ENA] ¢þ
>WENV181361013 OFNF01000698 [OFNF] sediment metagenome; Lake sediment 62 148 + Ser CGA [ENA] ¢þ
>WENV181361449 OFNX01000675 [OFNX] sediment metagenome; Lake sediment 198 284 + Ser CGA [ENA] ¢þ
>WENV181361770 OFOI01000139 [OFOI] sediment metagenome; Lake sediment 187 273 + Ser CGA [ENA] ¢þ
>WENV181363182 OFOT01001804 [OFOT] sediment metagenome; Lake sediment 399 313 - Ser CGA [ENA] ¢þ
>WENV183702747 PDVJ01000016 [PDVJ] alkali sediment metagenome; glacial lake sediment 39689 39775 + Ser CGA [ENA] ¢þ
>At0671 CP000780 Euryarchaeota Methanoregula boonei 6A8 [CP000780] 2466900 2466984 + Ser CGA [Ensembl] ¡û
>ENV09000431 ABSN01068318 Freshwater sediment metagenome lwFormaldehyde_C1 110 24 - Ser CGA [ENA] ¡û
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

BACK