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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrothermal vent metagenome LCHCB.C1
Anticodon = TAA
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.90095 (4 seq.)
>WENV170674702
LCWY01000527
[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
3016
3103
+
Leu
TAA
[ENA]
¢þ
>WENV170675026
LCWZ01001025
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
1158
1071
-
Leu
TAA
[ENA]
¢þ
>WENV170723191
LSQX01258291
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
33501
33588
+
Leu
TAA
[ENA]
¢þ
>ENV09001637
ACQI01000108
Hydrothermal vent metagenome LCHCB.C1
716
631
-
Leu
TAA
[ENA]
¡û
Identical group No.91312 (6 seq.)
>WENV180287294
OBIK01011511
[OBIK] hydrothermal vent metagenome; sea water
377
290
-
Leu
TAA
[ENA]
¢þ
>WENV180317361
OBKJ01129214
[OBKJ] metagenome; hydrothermal vent
170
83
-
Leu
TAA
[ENA]
¢þ
>WENV180648319
OCSI01165173
[OCSI] metagenome; diffuse fluid
30
117
+
Leu
TAA
[ENA]
¢þ
>WENV170635315
JDSF01001763
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
1194
1281
+
Leu
TAA
[ENA]
¢þ
>WENV170692937
LGOV01049428
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
10757
10670
-
Leu
TAA
[ENA]
¢þ
>ENV09001671
ACQI01001666
Hydrothermal vent metagenome LCHCB.C1
601
514
-
Leu
TAA
[ENA]
¡û
Identical group No.119708 (1 seq.)
>ENV09001644
ACQI01000216
Hydrothermal vent metagenome LCHCB.C1
784
870
+
Leu
TAA
[ENA]
¡û
Identical group No.119710 (1 seq.)
>ENV09001696
ACQI01002789
Hydrothermal vent metagenome LCHCB.C1
1492
1578
+
Leu
TAA
[ENA]
¡û
Identical group No.119713 (1 seq.)
>ENV09001788
ACQI01006104
Hydrothermal vent metagenome LCHCB.C1
4254
4340
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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