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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
Anticodon = GAA
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.297104 (3 seq.)
>WENV181412352
OGCI01127860
[OGCI] hot springs metagenome; Hot spring water
271
345
+
Phe
GAA
[ENA]
¢þ
>WENV170647824
JREQ01006487
[JREQ] marine sediment metagenome; clay from marine sediments 31 meters below sea floor depth collected from drilling site U1352C
702
626
-
Phe
GAA
[ENA]
¢þ
>SRA1002427
SRR001323.115647
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
51
124
+
Phe
GAA
[SRA]
Identical group No.429110 (1 seq.)
>SRA1002357
SRR001322.66282
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
79
5
-
Phe
GAA
[SRA]
Identical group No.461714 (11 seq.)
>C171097720
CP019646
Planctomycetota
Limihaloglobus sulfuriphilus SM-Chi-D1 [CP019646]
2285595
2285667
+
Phe
GAA
-
¡û
>WENV180591736
OCOV01089707
[OCOV] marine metagenome; ENVO:01000301
361
289
-
Phe
GAA
[ENA]
¢þ
>WENV181413477
OGCK01074796
[OGCK] hot springs metagenome; hot spring sediment
174
246
+
Phe
GAA
[ENA]
¢þ
>WENV183512431
OMKS01000468
[OMKS] sediment metagenome; hot spring sediment
13027
12955
-
Phe
GAA
[ENA]
¢þ
>WENV183512627
OMKS01000930
[OMKS] sediment metagenome; hot spring sediment
21378
21306
-
Phe
GAA
[ENA]
¢þ
>WENV183515306
OMKS01056342
[OMKS] sediment metagenome; hot spring sediment
1484
1412
-
Phe
GAA
[ENA]
¢þ
>WENV170017764
BARU01023123
[BARU] marine sediment metagenome; marine subsurface sediment at 18.6 meters below seafloor (mbsf), off the Shimokita Peninsula
551
479
-
Phe
GAA
[ENA]
¢þ
>WENV170612708
FUWD012665498
[FUWD] metagenome; unknown
168
96
-
Phe
GAA
[ENA]
¢þ
>WENV170969747
MTKW01038280
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
227
155
-
Phe
GAA
[ENA]
¢þ
>WENV170972362
MTKX01027160
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1169
1241
+
Phe
GAA
[ENA]
¢þ
>SRA1002474
SRR001324.57466
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
113
41
-
Phe
GAA
[SRA]
Identical group No.562811 (1 seq.)
>SRA1002522
SRR001325.87755
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
115
43
-
Phe
GAA
[SRA]
Identical group No.570896 (7 seq.)
>W141289729
JARN01000048
Chloroflexota
Dehalococcoidia bacterium DscP2 [JARN]
8012
8087
+
Phe
GAA
[ENA]
¡û
>WENV170016765
BARS01007664
[BARS] marine sediment metagenome; marine subsurface sediment at 0.8 meters below seafloor (mbsf), off the Shimokita Peninsula
221
294
+
Phe
GAA
[ENA]
¢þ
>WENV170017658
BARU01009604
[BARU] marine sediment metagenome; marine subsurface sediment at 18.6 meters below seafloor (mbsf), off the Shimokita Peninsula
705
632
-
Phe
GAA
[ENA]
¢þ
>WENV170018484
BARW01026589
[BARW] marine sediment metagenome; marine subsurface sediment at 107.0 meters below seafloor (mbsf), off the Shimokita Peninsula
361
436
+
Phe
GAA
[ENA]
¢þ
>WENV170647888
JRER01000961
[JRER] marine sediment metagenome; clay from marine sediments 136 meters below sea floor depth collected from drilling site U1352C
1399
1324
-
Phe
GAA
[ENA]
¢þ
>SRA1002469
SRR001324.51725
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
83
8
-
Phe
GAA
[SRA]
>SRA1002490
SRR001324.95744
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
83
8
-
Phe
GAA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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