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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
Anticodon = GCA
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.381062 (2 seq.)
>SRA1002483
SRR001324.73535
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
107
31
-
Cys
GCA
[SRA]
>SRA1002484
SRR001324.74437
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
107
31
-
Cys
GCA
[SRA]
Identical group No.429107 (1 seq.)
>SRA1002335
SRR001322.15936
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
14
90
+
Cys
GCA
[SRA]
Identical group No.429111 (1 seq.)
>SRA1002364
SRR001322.77033
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
1
74
+
Cys
GCA
[SRA]
Identical group No.477965 (6 seq.)
>WENV170017958
BARV01001425
[BARV] marine sediment metagenome; marine subsurface sediment at 48.5 meters below seafloor (mbsf), off the Shimokita Peninsula
120
192
+
Cys
GCA
[ENA]
¢þ
>WENV170017961
BARV01001425
[BARV] marine sediment metagenome; marine subsurface sediment at 48.5 meters below seafloor (mbsf), off the Shimokita Peninsula
1324
1252
-
Cys
GCA
[ENA]
¢þ
>WENV170018165
BARV01020810
[BARV] marine sediment metagenome; marine subsurface sediment at 48.5 meters below seafloor (mbsf), off the Shimokita Peninsula
500
572
+
Cys
GCA
[ENA]
¢þ
>WENV170018174
BARV01021825
[BARV] marine sediment metagenome; marine subsurface sediment at 48.5 meters below seafloor (mbsf), off the Shimokita Peninsula
518
446
-
Cys
GCA
[ENA]
¢þ
>WENV170018255
BARV01031191
[BARV] marine sediment metagenome; marine subsurface sediment at 48.5 meters below seafloor (mbsf), off the Shimokita Peninsula
603
531
-
Cys
GCA
[ENA]
¢þ
>SRA1002373
SRR001322.110064
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
102
30
-
Cys
GCA
[SRA]
Identical group No.480464 (4 seq.)
>WENV170647670
JREQ01001846
[JREQ] marine sediment metagenome; clay from marine sediments 31 meters below sea floor depth collected from drilling site U1352C
73
1
-
Cys
GCA
[ENA]
¢þ
>WENV170647727
JREQ01003238
[JREQ] marine sediment metagenome; clay from marine sediments 31 meters below sea floor depth collected from drilling site U1352C
8012
7937
-
Cys
GCA
[ENA]
¢þ
>WENV170647809
JREQ01005705
[JREQ] marine sediment metagenome; clay from marine sediments 31 meters below sea floor depth collected from drilling site U1352C
929
1004
+
Cys
GCA
[ENA]
¢þ
>SRA1002433
SRR001323.132222
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
95
20
-
Cys
GCA
[SRA]
Identical group No.628135 (1 seq.)
>SRA1002365
SRR001322.80998
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
86
13
-
Cys
GCA
[SRA]
Identical group No.639913 (1 seq.)
>SRA1002399
SRR001323.53235
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
34
106
+
Cys
GCA
[SRA]
Identical group No.639915 (1 seq.)
>SRA1002430
SRR001323.119511
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
77
2
-
Cys
GCA
[SRA]
Identical group No.639918 (1 seq.)
>SRA1002442
SRR001323.153954
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
30
105
+
Cys
GCA
[SRA]
Identical group No.720434 (2 seq.)
>SRA1002448
SRR001324.8522
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
89
15
-
Cys
GCA
[SRA]
>SRA1049899
SRR035095.156435
454 Sequencing (SRP001816)
491
417
-
Cys
GCA
[SRA]
Identical group No.726864 (1 seq.)
>SRA1002478
SRR001324.64585
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
96
22
-
Cys
GCA
[SRA]
Identical group No.771058 (1 seq.)
>SRA1002401
SRR001323.54290
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
18
92
+
Cys
GCA
[SRA]
Identical group No.771059 (1 seq.)
>SRA1002408
SRR001323.63581
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
16
89
+
Cys
GCA
[SRA]
Identical group No.812642 (1 seq.)
>SRA1002459
SRR001324.26909
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
40
110
+
Cys
GCA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK