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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Thermoproteota
Anticodon = GGG
HIT:
15 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.235164 (21 seq.)
>A178000241
CP002656
Thermoproteota
Metallosphaera cuprina Ar-4 [CP002656]
404949
405046
+
Pro
GGG
-
¡û
>A179000055
CP001399
Thermoproteota
Sulfolobus islandicus L.S.2.15 [CP001399]
1192810
1192906
+
Pro
GGG
-
¡û
>A179000061
CP001400
Thermoproteota
Sulfolobus islandicus M.14.25 [CP001400]
1116614
1116710
+
Pro
GGG
-
¡û
>A179000067
CP001401
Thermoproteota
Sulfolobus islandicus M.16.27 [CP001401]
1209025
1209121
+
Pro
GGG
-
¡û
>A179000073
CP001402
Thermoproteota
Sulfolobus islandicus M.16.4 [CP001402]
1099414
1099510
+
Pro
GGG
-
¡û
>A179000079
CP001403
Thermoproteota
Sulfolobus islandicus Y.G.57.14 [CP001403]
1092296
1092392
+
Pro
GGG
-
¡û
>A179000087
CP001404
Thermoproteota
Sulfolobus islandicus Y.N.15.51 [CP001404]
1475359
1475263
-
Pro
GGG
-
¡û
>A179000111
CP001800
Thermoproteota
Saccharolobus solfataricus [CP001800]
1804394
1804298
-
Pro
GGG
-
¡û
>A179000213
CP002425
Thermoproteota
Sulfolobus islandicus REY15A [CP002425]
1009446
1009542
+
Pro
GGG
-
¡û
>A179000219
CP002426
Thermoproteota
Sulfolobus islandicus HVE10/4 [CP002426]
1145795
1145891
+
Pro
GGG
-
¡û
>A179000274
CP002817
Thermoproteota
Sulfolobus acidocaldarius N8 [CP002817]
1096647
1096743
+
Pro
GGG
-
¡û
>A179000281
CP002818
Thermoproteota
Sulfolobus acidocaldarius Ron12/I [CP002818]
1096653
1096749
+
Pro
GGG
-
¡û
>A179000410
CP003928
Thermoproteota
Sulfolobus islandicus LAL14/1 [CP003928]
1011465
1011561
+
Pro
GGG
-
¡û
>A179000457
CP006977
Thermoproteota
Sulfolobus acidocaldarius SUSAZ [CP006977]
1063688
1063784
+
Pro
GGG
-
¡û
>A179000570
CP011055
Thermoproteota
Saccharolobus solfataricus SARC-B [CP011055]
1862574
1862478
-
Pro
GGG
-
¡û
>A179000576
CP011056
Thermoproteota
Saccharolobus solfataricus SARC-C [CP011056]
1862575
1862479
-
Pro
GGG
-
¡û
>A179000582
CP011057
Thermoproteota
Saccharolobus solfataricus SULA [CP011057]
1862592
1862496
-
Pro
GGG
-
¡û
>A179000659
CP017006
Thermoproteota
Sulfolobus sp. A20 [CP017006]
266735
266831
+
Pro
GGG
-
¡û
>A179000732
LT549890
Thermoproteota
Saccharolobus solfataricus P1 [LT549890]
917814
917718
-
Pro
GGG
-
¡û
>At0433
CP000077
Thermoproteota
Sulfolobus acidocaldarius DSM 639 [CP000077]
1096644
1096740
+
Pro
GGG
[Ensembl]
¡û
>At0510
AE006641
Thermoproteota
Saccharolobus solfataricus P2 [AE006641]
898373
898277
-
Pro
GGG
[Ensembl]
¡û
Identical group No.235323 (1 seq.)
>At0552
BA000023
Thermoproteota
Sulfurisphaera tokodaii str. 7 [BA000023]
914044
913951
-
Pro
GGG
[Ensembl]
¡û
Identical group No.235729 (6 seq.)
>A178000576
CP012172
Thermoproteota
Metallosphaera sedula ARS50-1 [CP012172]
1724976
1724878
-
Pro
GGG
-
¡û
>A178000593
CP012173
Thermoproteota
Metallosphaera sedula ARS50-2 [CP012173]
1724972
1724874
-
Pro
GGG
-
¡û
>A178000610
CP012174
Thermoproteota
Metallosphaera sedula ARS120-1 [CP012174]
1724974
1724876
-
Pro
GGG
-
¡û
>A178000627
CP012175
Thermoproteota
Metallosphaera sedula ARS120-2 [CP012175]
1724976
1724878
-
Pro
GGG
-
¡û
>A178000644
CP012176
Thermoproteota
Metallosphaera sedula SARC-M1 [CP012176]
1724976
1724878
-
Pro
GGG
-
¡û
>At0178
CP000682
Thermoproteota
Metallosphaera sedula DSM 5348 [CP000682]
1724960
1724864
-
Pro
GGG
[Ensembl]
¡û
Identical group No.237036 (1 seq.)
>A178000715
CP020477
Thermoproteota
Acidianus manzaensis YN-25 [CP020477]
2052005
2052101
+
Pro
GGG
-
¡û
Identical group No.238727 (1 seq.)
>A179000234
CP002535
Thermoproteota
Acidianus hospitalis W1 [CP002535]
1125428
1125332
-
Pro
GGG
-
¡û
Identical group No.244881 (3 seq.)
>A178000009
AP012489
Thermoproteota
Aeropyrum camini SY1 = JCM 12091 [AP012489]
1108765
1108652
-
Pro
GGG
-
¡û
>A178000165
CP002098
Thermoproteota
Ignisphaera aggregans DSM 17230 [CP002098]
1388845
1388754
-
Pro
GGG
-
¡û
>At0040
BA000002
Thermoproteota
Aeropyrum pernix K1 [BA000002]
1161734
1161620
-
Pro
GGG
[Ensembl]
¡û
Identical group No.244887 (4 seq.)
>A178000022
CP001140
Thermoproteota
Desulfurococcus amylolyticus 1221n [CP001140]
655532
655639
+
Pro
GGG
-
¡û
>A178000175
CP002363
Thermoproteota
Desulfurococcus mucosus DSM 2162 [CP002363]
578880
578774
-
Pro
GGG
-
¡û
>A178000322
CP003321
Thermoproteota
Desulfurococcus amylolyticus DSM 16532 [CP003321]
802260
802155
-
Pro
GGG
-
¡û
>A178000341
CP003531
Thermoproteota
Thermogladius calderae 1633 [CP003531]
70048
70153
+
Pro
GGG
-
¡û
Identical group No.245498 (9 seq.)
>A178000019
CP001014
Thermoproteota
Pyrobaculum neutrophilum V24Sta [CP001014]
1492363
1492460
+
Pro
GGG
-
¡û
>A178000147
CP002051
Thermoproteota
Staphylothermus hellenicus DSM 12710 [CP002051]
1178413
1178521
+
Pro
GGG
-
¡û
>A179000135
CP001939
Thermoproteota
Thermosphaera aggregans DSM 11486 [CP001939]
116985
116880
-
Pro
GGG
-
¡û
>A179000352
CP003316
Thermoproteota
Pyrobaculum oguniense TE7 [CP003316]
796454
796364
-
Pro
GGG
-
¡û
>At0203
AE009441
Thermoproteota
Pyrobaculum aerophilum str. IM2 [AE009441]
1798211
1798301
+
Pro
GGG
[Ensembl]
¡û
>At0241
CP000660
Thermoproteota
Pyrobaculum arsenaticum DSM 13514 [CP000660]
1155235
1155325
+
Pro
GGG
[Ensembl]
¡û
>At0321
CP000561
Thermoproteota
Pyrobaculum calidifontis JCM 11548 [CP000561]
1601212
1601090
-
Pro
GGG
[Ensembl]
¡û
>At0353
CP000504
Thermoproteota
Pyrobaculum islandicum DSM 4184 [CP000504]
409898
409784
-
Pro
GGG
[Ensembl]
¡û
>At0417
CP000575
Thermoproteota
Staphylothermus marinus F1 [CP000575]
1198387
1198279
-
Pro
GGG
[Ensembl]
¡û
Identical group No.256480 (1 seq.)
>A178000275
CP002838
Thermoproteota
Pyrolobus fumarii 1A [CP002838]
614048
614156
+
Pro
GGG
-
¡û
Identical group No.266435 (1 seq.)
>A178000013
CP000852
Thermoproteota
Caldivirga maquilingensis IC-167 [CP000852]
767479
767586
+
Pro
GGG
-
¡û
Identical group No.349708 (4 seq.)
>A171003909
CP006867
Thermoproteota
Ignicoccus islandicus DSM 13165 [CP006867]
108393
108469
+
Pro
GGG
-
¡û
>A178000666
CP013011
Thermoproteota
Pyrodictium delaneyi Su06 [CP013011]
1232370
1232480
+
Pro
GGG
-
¡û
>A179000385
CP003423
Thermoproteota
Fervidicoccus fontis Kam940 [CP003423]
117291
117190
-
Pro
GGG
-
¡û
>At2203
CP000816
Thermoproteota
Ignicoccus hospitalis KIN4/I [CP000816]
314236
314337
+
Pro
GGG
[Ensembl]
¡û
Identical group No.372638 (2 seq.)
>A171005711
CP009961
Thermoproteota
Infirmifilum uzonense 1807-2 [CP009961]
1186474
1186401
-
Pro
GGG
-
¡û
>At0579
CP000505
Thermoproteota
Thermofilum pendens Hrk 5 [CP000505]
643667
643802
+
Pro
GGG
[Ensembl]
¡û
Identical group No.417216 (1 seq.)
>At0112
CP000493
Thermoproteota
Hyperthermus butylicus DSM 5456 [CP000493]
1171412
1171523
+
Pro
GGG
[Ensembl]
¡û
Identical group No.422942 (1 seq.)
>A178000101
CP001742
Thermoproteota
Acidilobus saccharovorans 345-15 [CP001742]
1115779
1115674
-
Pro
GGG
-
¡û
Identical group No.446352 (1 seq.)
>A178000333
CP003378
Thermoproteota
Caldisphaera lagunensis DSM 15908 [CP003378]
429204
429099
-
Pro
GGG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK