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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = CGA
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.119157 (7 seq.)
>A171003615
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
210625
210709
+
Ser
CGA
-
¡û
>A171006619
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1097810
1097894
+
Ser
CGA
-
¡û
>W141000050
AADL01001095
Unclassified
mine drainage metagenome Group III [AADL]
741
657
-
Ser
CGA
[ENA]
¡û
>W141000082
AADL01001503
Unclassified
mine drainage metagenome Group III [AADL]
18806
18890
+
Ser
CGA
[ENA]
¡û
>W1610000054
AABC05000005
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
112639
112723
+
Ser
CGA
[ENA]
¡û
>WENV077058
AADL01001095
Acid Mine Drainage microbial communities from Richmond mine
741
655
-
Ser
CGA
[ENA]
>WENV077091
AADL01001503
Acid Mine Drainage microbial communities from Richmond mine
18806
18892
+
Ser
CGA
[ENA]
Identical group No.132386 (1 seq.)
>A171002882
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
1011255
1011171
-
Ser
CGA
-
¡û
Identical group No.135249 (2 seq.)
>At1770
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
911234
911148
-
Ser
CGA
[Ensembl]
¡û
>W1930008460
FWYE01000001
Unclassified
Picrophilus oshimae DSM 9789 [FWYE]
66015
66101
+
Ser
CGA
[ENA]
¡û
Identical group No.154099 (13 seq.)
>A171002537
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
1351174
1351259
+
Ser
CGA
-
¡û
>A171003525
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
1526465
1526550
+
Ser
CGA
-
¡û
>WENV180326389
OBKS01066386
[OBKS] human gut metagenome; human gut
547
632
+
Ser
CGA
[ENA]
¢þ
>WENV180330584
OBKV01110734
[OBKV] human gut metagenome; human gut
256
341
+
Ser
CGA
[ENA]
¢þ
>WENV181607355
OGLM01007310
[OGLM] metagenome; Human gut stool
2509
2424
-
Ser
CGA
[ENA]
¢þ
>WENV181655680
OGOB01000445
[OGOB] metagenome; Human gut stool
9997
9912
-
Ser
CGA
[ENA]
¢þ
>WENV181772635
OGRD01009508
[OGRD] human gut metagenome; faeces
2279
2194
-
Ser
CGA
[ENA]
¢þ
>WENV182524232
OIWT01000083
[OIWT] human gut metagenome; faeces
112235
112320
+
Ser
CGA
[ENA]
¢þ
>WENV183045723
OLGE01021932
[OLGE] human gut metagenome; faeces
2052
2137
+
Ser
CGA
[ENA]
¢þ
>WENV183409738
OMAG01006154
[OMAG] human gut metagenome; feces
2685
2600
-
Ser
CGA
[ENA]
¢þ
>WENV183458589
OMDM01033273
[OMDM] human gut metagenome; feces
636
551
-
Ser
CGA
[ENA]
¢þ
>WENV183517564
OMNP01003728
[OMNP] human gut metagenome; feces
981
1066
+
Ser
CGA
[ENA]
¢þ
>W1610011074
AMSE01000005
Unclassified
Methanomethylophilus alvi alvus Mx1201 [AMSE]
449703
449618
-
Ser
CGA
[ENA]
¡û
Identical group No.154186 (1 seq.)
>A17A001021
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
1142659
1142553
-
Ser
CGA
-
¡û
Identical group No.154187 (1 seq.)
>A179000424
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
1142659
1142553
-
Ser
CGA
-
¡û
Identical group No.161391 (3 seq.)
>A171006535
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
120510
120425
-
Ser
CGA
-
¡û
>WENV180672991
OCVV011335522
[OCVV] gut metagenome; gut
1363
1278
-
Ser
CGA
[ENA]
¢þ
>WENV180672992
OCVV011335522
[OCVV] gut metagenome; gut
1363
1278
-
Ser
CGA
[ENA]
¢þ
Identical group No.162790 (3 seq.)
>A171001371
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
934439
934356
-
Ser
CGA
-
¡û
>W1610000678
ABSD01000044
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
6698
6783
+
Ser
CGA
[ENA]
¡û
>W1610001703
ADFG01000018
Unclassified
Candidatus Aciduliprofundum boonei T469 [ADFG]
5959
5874
-
Ser
CGA
[ENA]
¡û
Identical group No.164857 (3 seq.)
>At2008
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
1477335
1477253
-
Ser
CGA
[Ensembl]
¡û
>At2053
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
1521804
1521722
-
Ser
CGA
[Ensembl]
¡û
>W1911681185
QJSM01000040
Unclassified
Thermoplasma sp. Kam2015 [QJSM]
12425
12339
-
Ser
CGA
[ENA]
¡û
Identical group No.174360 (2 seq.)
>A171007728
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
261580
261664
+
Ser
CGA
-
¡û
>A171007765
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
243227
243311
+
Ser
CGA
-
¡û
Identical group No.179204 (1 seq.)
>A171005730
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
1051690
1051775
+
Ser
CGA
-
¡û
Identical group No.301919 (2 seq.)
>A17A000669
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
1186302
1186195
-
Ser
CGA
-
¡û
>A17A001009
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
1362724
1362615
-
Ser
CGA
-
¡û
Identical group No.399304 (1 seq.)
>A17A001494
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
272343
272451
+
Ser
CGA
-
¡û
Identical group No.446348 (1 seq.)
>A17A001302
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
879126
879021
-
Ser
CGA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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