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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = GGA
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.95681 (5 seq.)
>A171001379
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
197771
197686
-
Ser
GGA
-
¡û
>A171002870
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
765146
765230
+
Ser
GGA
-
¡û
>W1610000643
ABSD01000006
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
116715
116628
-
Ser
GGA
[ENA]
¡û
>W1610000667
ABSD01000036
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
11741
11828
+
Ser
GGA
[ENA]
¡û
>W1610001686
ADFG01000002
Unclassified
Candidatus Aciduliprofundum boonei T469 [ADFG]
52267
52180
-
Ser
GGA
[ENA]
¡û
Identical group No.100650 (1 seq.)
>A171000304
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1556094
1556181
+
Ser
GGA
-
¡û
Identical group No.105999 (1 seq.)
>At1978
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
1185299
1185383
+
Ser
GGA
[Ensembl]
¡û
Identical group No.112919 (10 seq.)
>A171002532
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
1155882
1155968
+
Ser
GGA
-
¡û
>A171003537
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
1297500
1297414
-
Ser
GGA
-
¡û
>WENV180326688
OBKS01143290
[OBKS] human gut metagenome; human gut
272
186
-
Ser
GGA
[ENA]
¢þ
>WENV181606720
OGLM01000928
[OGLM] metagenome; Human gut stool
279
365
+
Ser
GGA
[ENA]
¢þ
>WENV181655763
OGOB01001012
[OGOB] metagenome; Human gut stool
10591
10505
-
Ser
GGA
[ENA]
¢þ
>WENV181772532
OGRD01005979
[OGRD] human gut metagenome; faeces
325
239
-
Ser
GGA
[ENA]
¢þ
>WENV182524923
OIWT01000861
[OIWT] human gut metagenome; faeces
3412
3498
+
Ser
GGA
[ENA]
¢þ
>WENV183409893
OMAG01015255
[OMAG] human gut metagenome; feces
328
242
-
Ser
GGA
[ENA]
¢þ
>WENV183458359
OMDM01008385
[OMDM] human gut metagenome; feces
220
134
-
Ser
GGA
[ENA]
¢þ
>W1610011064
AMSE01000005
Unclassified
Methanomethylophilus alvi alvus Mx1201 [AMSE]
678668
678754
+
Ser
GGA
[ENA]
¡û
Identical group No.113050 (8 seq.)
>A171003696
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
490403
490487
+
Ser
GGA
-
¡û
>WENV181035901
ODXP01000050
[ODXP] human metagenome; G_DNA_Stool
63917
64001
+
Ser
GGA
[ENA]
¢þ
>WENV181088854
OEBA01006069
[OEBA] human metagenome; G_DNA_Stool
1519
1435
-
Ser
GGA
[ENA]
¢þ
>WENV182031553
OHCS01044575
[OHCS] human gut metagenome; feces
518
434
-
Ser
GGA
[ENA]
¢þ
>WENV182082267
OHGK01051593
[OHGK] human gut metagenome; feces
142
226
+
Ser
GGA
[ENA]
¢þ
>WENV182535845
OIXH01000020
[OIXH] human gut metagenome; faeces
128698
128614
-
Ser
GGA
[ENA]
¢þ
>WENV183038250
OLGB01000252
[OLGB] human gut metagenome; faeces
74029
74113
+
Ser
GGA
[ENA]
¢þ
>WENV183040945
OLGD01000242
[OLGD] human gut metagenome; faeces
43914
43830
-
Ser
GGA
[ENA]
¢þ
Identical group No.119158 (7 seq.)
>A171003630
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
1793026
1793110
+
Ser
GGA
-
¡û
>A171006618
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
754596
754680
+
Ser
GGA
-
¡û
>W141000051
AADL01001102
Unclassified
mine drainage metagenome Group III [AADL]
2857
2941
+
Ser
GGA
[ENA]
¡û
>W141000083
AADL01001503
Unclassified
mine drainage metagenome Group III [AADL]
21561
21645
+
Ser
GGA
[ENA]
¡û
>W1610000081
AABC05000015
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
56622
56706
+
Ser
GGA
[ENA]
¡û
>WENV077059
AADL01001102
Acid Mine Drainage microbial communities from Richmond mine
2857
2943
+
Ser
GGA
[ENA]
>WENV077092
AADL01001503
Acid Mine Drainage microbial communities from Richmond mine
21561
21647
+
Ser
GGA
[ENA]
Identical group No.124568 (5 seq.)
>A171006530
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
358331
358245
-
Ser
GGA
-
¡û
>WENV180664091
OCVV011145584
[OCVV] gut metagenome; gut
723
807
+
Ser
GGA
[ENA]
¢þ
>WENV180664092
OCVV011145584
[OCVV] gut metagenome; gut
723
807
+
Ser
GGA
[ENA]
¢þ
>WENV180665841
OCVV011196953
[OCVV] gut metagenome; gut
137
51
-
Ser
GGA
[ENA]
¢þ
>WENV180665842
OCVV011196953
[OCVV] gut metagenome; gut
137
51
-
Ser
GGA
[ENA]
¢þ
Identical group No.130285 (1 seq.)
>At2038
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
436949
436866
-
Ser
GGA
[Ensembl]
¡û
Identical group No.158040 (4 seq.)
>A171007748
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
1813568
1813485
-
Ser
GGA
-
¡û
>A171007785
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
1758366
1758283
-
Ser
GGA
-
¡û
>W141000115
AADL01001671
Unclassified
mine drainage metagenome Group III [AADL]
1663
1580
-
Ser
GGA
[ENA]
¡û
>WENV077123
AADL01001671
Acid Mine Drainage microbial communities from Richmond mine
1663
1578
-
Ser
GGA
[ENA]
Identical group No.160478 (7 seq.)
>At1769
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
909582
909500
-
Ser
GGA
[Ensembl]
¡û
>W1910469076
FWYE01000001
Unclassified
Picrophilus oshimae DSM 9789 [FWYE]
67667
67750
+
Ser
GGA
[ENA]
¡û
>W1910585096
JYHS01000006
Unclassified
Acidiplasma sp. MBA-1 [JYHS]
14175
14092
-
Ser
GGA
[ENA]
¡û
>W1610047603
BBDK01000033
Unclassified
Acidiplasma cupricumulans JCM 13668 [BBDK]
6585
6502
-
Ser
GGA
[ENA]
¡û
>W1610642299
LJCQ01000169
Unclassified
Acidiplasma aeolicum V [LJCQ]
3843
3926
+
Ser
GGA
[ENA]
¡û
>W1610670464
LKBG01000134
Unclassified
Acidiplasma aeolicum VT [LKBG]
12730
12813
+
Ser
GGA
[ENA]
¡û
>W1610670501
LKBH01000153
Unclassified
Acidiplasma cupricumulans BH2 [LKBH]
2400
2317
-
Ser
GGA
[ENA]
¡û
Identical group No.179203 (1 seq.)
>A171005725
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
845908
845992
+
Ser
GGA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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