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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = TAC
HIT:
14 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.455554 (10 seq.)
>A171003510
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
210844
210919
+
Val
TAC
-
¡û
>WENV180340966
OBLI01060507
[OBLI] pig gut metagenome; faeces
1042
967
-
Val
TAC
[ENA]
¢þ
>WENV181607017
OGLM01002726
[OGLM] metagenome; Human gut stool
1019
1094
+
Val
TAC
[ENA]
¢þ
>WENV181655874
OGOB01002936
[OGOB] metagenome; Human gut stool
548
623
+
Val
TAC
[ENA]
¢þ
>WENV182524585
OIWT01000356
[OIWT] human gut metagenome; faeces
7548
7473
-
Val
TAC
[ENA]
¢þ
>WENV183045424
OLGE01010850
[OLGE] human gut metagenome; faeces
1528
1603
+
Val
TAC
[ENA]
¢þ
>WENV183409641
OMAG01003295
[OMAG] human gut metagenome; feces
3851
3926
+
Val
TAC
[ENA]
¢þ
>WENV183458445
OMDM01014536
[OMDM] human gut metagenome; feces
495
420
-
Val
TAC
[ENA]
¢þ
>WENV183518007
OMNP01043619
[OMNP] human gut metagenome; feces
152
227
+
Val
TAC
[ENA]
¢þ
>W1610011077
AMSE01000005
Unclassified
Methanomethylophilus alvi alvus Mx1201 [AMSE]
98529
98454
-
Val
TAC
[ENA]
¡û
Identical group No.456291 (6 seq.)
>A171003721
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
90121
90048
-
Val
TAC
-
¡û
>WENV180620068
OCQB01026319
[OCQB] human gut metagenome; human gut
26
99
+
Val
TAC
[ENA]
¢þ
>WENV181036564
ODXP01001343
[ODXP] human metagenome; G_DNA_Stool
18294
18221
-
Val
TAC
[ENA]
¢þ
>WENV181088697
OEBA01003884
[OEBA] human metagenome; G_DNA_Stool
1103
1176
+
Val
TAC
[ENA]
¢þ
>WENV181702032
OGPH01013500
[OGPH] human gut metagenome; faeces
1626
1553
-
Val
TAC
[ENA]
¢þ
>WENV182216190
OHQM01031728
[OHQM] human gut metagenome; feces
695
622
-
Val
TAC
[ENA]
¢þ
Identical group No.470999 (32 seq.)
>A171007758
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
562082
562010
-
Val
TAC
-
¡û
>A171007795
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
560422
560349
-
Val
TAC
-
¡û
>W141000080
AADL01001502
Unclassified
mine drainage metagenome Group III [AADL]
59348
59276
-
Val
TAC
[ENA]
¡û
>W141000112
AADL01001651
Unclassified
mine drainage metagenome Group III [AADL]
705
633
-
Val
TAC
[ENA]
¡û
>W141000121
AADL01001728
Unclassified
mine drainage metagenome Group III [AADL]
891
963
+
Val
TAC
[ENA]
¡û
>W141000141
AADL01001991
Unclassified
mine drainage metagenome Group III [AADL]
4467
4394
-
Val
TAC
[ENA]
¡û
>WENV180343181
OBLK01000084
[OBLK] soil metagenome; Clay
74
2
-
Val
TAC
[ENA]
¢þ
>WENV181291733
OFHC01009749
[OFHC] soil metagenome; Clay
106
179
+
Val
TAC
[ENA]
¢þ
>WENV181292294
OFHE01000039
[OFHE] soil metagenome; Clay
17680
17753
+
Val
TAC
[ENA]
¢þ
>WENV181292368
OFHE01002796
[OFHE] soil metagenome; Clay
600
672
+
Val
TAC
[ENA]
¢þ
>WENV181295032
OFHI01000013
[OFHI] soil metagenome; Clay
9716
9789
+
Val
TAC
[ENA]
¢þ
>WENV181295075
OFHI01000087
[OFHI] soil metagenome; Clay
21185
21257
+
Val
TAC
[ENA]
¢þ
>WENV181295143
OFHI01001227
[OFHI] soil metagenome; Clay
876
949
+
Val
TAC
[ENA]
¢þ
>WENV181295634
OFHJ01000034
[OFHJ] soil metagenome; Clay
16747
16675
-
Val
TAC
[ENA]
¢þ
>WENV181295738
OFHJ01000352
[OFHJ] soil metagenome; Clay
13955
13882
-
Val
TAC
[ENA]
¢þ
>WENV181295845
OFHJ01001125
[OFHJ] soil metagenome; Clay
7858
7786
-
Val
TAC
[ENA]
¢þ
>WENV181296541
OFHJ01055895
[OFHJ] soil metagenome; Clay
260
188
-
Val
TAC
[ENA]
¢þ
>W1910585066
JYHS01000001
Unclassified
Acidiplasma sp. MBA-1 [JYHS]
346890
346963
+
Val
TAC
[ENA]
¡û
>ENV09001967
ACXJ01002138
Mine drainage metagenome Contig1
1028
955
-
Val
TAC
[ENA]
¡û
>ENV09001987
ACXJ01004050
Mine drainage metagenome Contig1
467
539
+
Val
TAC
[ENA]
¡û
>ENV09002199
ACXJ01011098
Mine drainage metagenome Contig1
1184
1111
-
Val
TAC
[ENA]
¡û
>ENV09002260
ACXJ01012237
Mine drainage metagenome Contig1
1616
1543
-
Val
TAC
[ENA]
¡û
>ENV09002284
ACXK01000057
Thermoplasmatales archaeon A-plasma AplasmaContig10144
105878
105951
+
Val
TAC
[ENA]
¡û
>ENV09002331
ACXL01000017
Thermoplasmatales archaeon E-plasma EplasmaContig2057
79633
79561
-
Val
TAC
[ENA]
¡û
>W1610047601
BBDK01000031
Unclassified
Acidiplasma cupricumulans JCM 13668 [BBDK]
2181
2106
-
Val
TAC
[ENA]
¡û
>W1610642303
LJCQ01000179
Unclassified
Acidiplasma aeolicum V [LJCQ]
3865
3792
-
Val
TAC
[ENA]
¡û
>W1610670456
LKBG01000078
Unclassified
Acidiplasma aeolicum VT [LKBG]
15147
15220
+
Val
TAC
[ENA]
¡û
>W1610670491
LKBH01000045
Unclassified
Acidiplasma cupricumulans BH2 [LKBH]
2179
2104
-
Val
TAC
[ENA]
¡û
>WENV077089
AADL01001502
Acid Mine Drainage microbial communities from Richmond mine
59348
59273
-
Val
TAC
[ENA]
>WENV077120
AADL01001651
Acid Mine Drainage microbial communities from Richmond mine
705
630
-
Val
TAC
[ENA]
>WENV077129
AADL01001728
Acid Mine Drainage microbial communities from Richmond mine
891
966
+
Val
TAC
[ENA]
>WENV077149
AADL01001991
Acid Mine Drainage microbial communities from Richmond mine
4467
4392
-
Val
TAC
[ENA]
Identical group No.507967 (3 seq.)
>A171003642
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
428539
428467
-
Val
TAC
-
¡û
>A171006634
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1325302
1325230
-
Val
TAC
-
¡û
>W1610000058
AABC05000008
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
192031
191959
-
Val
TAC
[ENA]
¡û
Identical group No.515321 (3 seq.)
>A171006520
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
1717089
1717016
-
Val
TAC
-
¡û
>WENV180676082
OCVV011361524
[OCVV] gut metagenome; gut
1008
935
-
Val
TAC
[ENA]
¢þ
>WENV180676084
OCVV011361524
[OCVV] gut metagenome; gut
1008
935
-
Val
TAC
[ENA]
¢þ
Identical group No.526075 (4 seq.)
>A171001368
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
1359445
1359372
-
Val
TAC
-
¡û
>W1610000653
ABSD01000024
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
190897
190824
-
Val
TAC
[ENA]
¡û
>W1610000660
ABSD01000032
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
63442
63515
+
Val
TAC
[ENA]
¡û
>W1610001689
ADFG01000004
Unclassified
Candidatus Aciduliprofundum boonei T469 [ADFG]
65834
65761
-
Val
TAC
[ENA]
¡û
Identical group No.541364 (1 seq.)
>At2049
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
1247190
1247118
-
Val
TAC
[Ensembl]
¡û
Identical group No.551672 (1 seq.)
>A171002891
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
275862
275789
-
Val
TAC
-
¡û
Identical group No.563625 (1 seq.)
>A171000309
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1587325
1587253
-
Val
TAC
-
¡û
Identical group No.563638 (1 seq.)
>A171002522
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
219517
219592
+
Val
TAC
-
¡û
Identical group No.582489 (2 seq.)
>At1966
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
237339
237411
+
Val
TAC
[Ensembl]
¡û
>W1911681160
QJSM01000012
Unclassified
Thermoplasma sp. Kam2015 [QJSM]
30008
30080
+
Val
TAC
[ENA]
¡û
Identical group No.647081 (1 seq.)
>C151068560
CP010426
Unclassified
archaeon GW2011_AR20 [CP010426]
620454
620379
-
Val
TAC
-
¡û
Identical group No.647542 (1 seq.)
>A171005741
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
1129289
1129214
-
Val
TAC
-
¡û
Identical group No.721439 (2 seq.)
>At1739
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
765849
765920
+
Val
TAC
[Ensembl]
¡û
>W1910469088
FWYE01000001
Unclassified
Picrophilus oshimae DSM 9789 [FWYE]
211047
210976
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK