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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Unclassified
Anticodon = TGC
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.338090 (5 seq.)
>A171001374
CP001941
Unclassified
Aciduliprofundum boonei T469 [CP001941]
860950
860875
-
Ala
TGC
-
¡û
>A171002865
CP003168
Unclassified
Aciduliprofundum sp. MAR08-339 [CP003168]
57836
57909
+
Ala
TGC
-
¡û
>W1610000658
ABSD01000027
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
20938
20864
-
Ala
TGC
[ENA]
¡û
>W1610000677
ABSD01000040
Unclassified
Candidatus Aciduliprofundum boonei T469 [ABSD]
22301
22226
-
Ala
TGC
[ENA]
¡û
>W1610001697
ADFG01000010
Unclassified
Candidatus Aciduliprofundum boonei T469 [ADFG]
37371
37296
-
Ala
TGC
[ENA]
¡û
Identical group No.455555 (13 seq.)
>A171002524
CP002916
Unclassified
Thermoplasmatales archaeon BRNA1 [CP002916]
347072
347145
+
Ala
TGC
-
¡û
>A171003512
CP004049
Unclassified
Candidatus Methanomethylophilus alvi Mx1201 [CP004049]
299097
299170
+
Ala
TGC
-
¡û
>WENV180326490
OBKS01085790
[OBKS] human gut metagenome; human gut
381
308
-
Ala
TGC
[ENA]
¢þ
>WENV181607597
OGLM01014447
[OGLM] metagenome; Human gut stool
1708
1781
+
Ala
TGC
[ENA]
¢þ
>WENV181655765
OGOB01001027
[OGOB] metagenome; Human gut stool
5373
5446
+
Ala
TGC
[ENA]
¢þ
>WENV182525341
OIWT01001962
[OIWT] human gut metagenome; faeces
1916
1989
+
Ala
TGC
[ENA]
¢þ
>WENV183046291
OLGE01130962
[OLGE] human gut metagenome; faeces
462
389
-
Ala
TGC
[ENA]
¢þ
>WENV183382876
OLYL01026700
[OLYL] human gut metagenome; feces
906
833
-
Ala
TGC
[ENA]
¢þ
>WENV183409987
OMAG01029581
[OMAG] human gut metagenome; feces
393
320
-
Ala
TGC
[ENA]
¢þ
>WENV183439059
OMCF01026700
[OMCF] human gut metagenome; feces
906
833
-
Ala
TGC
[ENA]
¢þ
>WENV183458256
OMDM01004083
[OMDM] human gut metagenome; feces
1748
1821
+
Ala
TGC
[ENA]
¢þ
>WENV183517744
OMNP01010449
[OMNP] human gut metagenome; feces
1337
1264
-
Ala
TGC
[ENA]
¢þ
>W1610011079
AMSE01000005
Unclassified
Methanomethylophilus alvi alvus Mx1201 [AMSE]
10276
10203
-
Ala
TGC
[ENA]
¡û
Identical group No.480557 (11 seq.)
>A171006523
CP014214
Unclassified
methanogenic archaeon ISO4-H5 [CP014214]
1537061
1536988
-
Ala
TGC
-
¡û
>WENV180340730
OBLI01041308
[OBLI] pig gut metagenome; faeces
1185
1260
+
Ala
TGC
[ENA]
¢þ
>WENV180665513
OCVV011189644
[OCVV] gut metagenome; gut
1575
1502
-
Ala
TGC
[ENA]
¢þ
>WENV180665514
OCVV011189644
[OCVV] gut metagenome; gut
1575
1502
-
Ala
TGC
[ENA]
¢þ
>WENV180668491
OCVV011261197
[OCVV] gut metagenome; gut
1290
1217
-
Ala
TGC
[ENA]
¢þ
>WENV180668492
OCVV011261197
[OCVV] gut metagenome; gut
1290
1217
-
Ala
TGC
[ENA]
¢þ
>WENV180673313
OCVV011338091
[OCVV] gut metagenome; gut
79
6
-
Ala
TGC
[ENA]
¢þ
>WENV180673314
OCVV011338091
[OCVV] gut metagenome; gut
79
6
-
Ala
TGC
[ENA]
¢þ
>WENV170650932
JRYE01071410
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
300
375
+
Ala
TGC
[ENA]
¢þ
>WENV170653400
JRYI01156725
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
156
81
-
Ala
TGC
[ENA]
¢þ
>WENV170717993
LSQX01057638
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
3918
3845
-
Ala
TGC
[ENA]
¢þ
Identical group No.563627 (1 seq.)
>A171000317
CP000968
Unclassified
Candidatus Korarchaeum cryptofilum OPF8 [CP000968]
1340925
1340852
-
Ala
TGC
-
¡û
Identical group No.639789 (1 seq.)
>C151068542
CP010424
Unclassified
archaeon GW2011_AR10 [CP010424]
164396
164468
+
Ala
TGC
-
¡û
Identical group No.647536 (1 seq.)
>A171005728
CP010070
Unclassified
Candidatus Methanoplasma termitum MpT1 [CP010070]
1014450
1014525
+
Ala
TGC
-
¡û
Identical group No.655760 (9 seq.)
>A171003701
CP005934
Unclassified
Candidatus Methanomassiliicoccus intestinalis Issoire-Mx1 [CP005934]
1458440
1458512
+
Ala
TGC
-
¡û
>WENV180620204
OCQB01040108
[OCQB] human gut metagenome; human gut
503
431
-
Ala
TGC
[ENA]
¢þ
>WENV180963344
ODUN01133922
[ODUN] human metagenome; G_DNA_Stool
308
380
+
Ala
TGC
[ENA]
¢þ
>WENV181035835
ODXP01000015
[ODXP] human metagenome; G_DNA_Stool
172350
172278
-
Ala
TGC
[ENA]
¢þ
>WENV181088896
OEBA01006884
[OEBA] human metagenome; G_DNA_Stool
673
745
+
Ala
TGC
[ENA]
¢þ
>WENV182082276
OHGK01056356
[OHGK] human gut metagenome; feces
173
245
+
Ala
TGC
[ENA]
¢þ
>WENV182535779
OIXH01000001
[OIXH] human gut metagenome; faeces
295829
295903
+
Ala
TGC
[ENA]
¢þ
>WENV183038255
OLGB01000262
[OLGB] human gut metagenome; faeces
65392
65466
+
Ala
TGC
[ENA]
¢þ
>WENV183040424
OLGD01000006
[OLGD] human gut metagenome; faeces
295829
295903
+
Ala
TGC
[ENA]
¢þ
Identical group No.674649 (8 seq.)
>A171007726
LT671858
Unclassified
Cuniculiplasma divulgatum S5(T) [LT671858]
56252
56323
+
Ala
TGC
-
¡û
>A171007763
LT719092
Unclassified
Cuniculiplasma divulgatum PM4 [LT719092]
56252
56323
+
Ala
TGC
-
¡û
>W141000122
AADL01001734
Unclassified
mine drainage metagenome Group III [AADL]
8626
8697
+
Ala
TGC
[ENA]
¡û
>W141000153
AADL01002240
Unclassified
mine drainage metagenome Group III [AADL]
601
672
+
Ala
TGC
[ENA]
¡û
>ENV09002027
ACXJ01007210
Mine drainage metagenome Contig1
1349
1278
-
Ala
TGC
[ENA]
¡û
>ENV09002185
ACXJ01010989
Mine drainage metagenome Contig1
257
186
-
Ala
TGC
[ENA]
¡û
>WENV077130
AADL01001734
Acid Mine Drainage microbial communities from Richmond mine
8626
8700
+
Ala
TGC
[ENA]
>WENV077161
AADL01002240
Acid Mine Drainage microbial communities from Richmond mine
601
675
+
Ala
TGC
[ENA]
Identical group No.686236 (7 seq.)
>At1757
AE017261
Unclassified
Picrophilus oshimae DSM 9789 DSM 9790 [AE017261]
531405
531334
-
Ala
TGC
[Ensembl]
¡û
>W1910469085
FWYE01000001
Unclassified
Picrophilus oshimae DSM 9789 [FWYE]
440786
440857
+
Ala
TGC
[ENA]
¡û
>W1910585092
JYHS01000003
Unclassified
Acidiplasma sp. MBA-1 [JYHS]
217965
217892
-
Ala
TGC
[ENA]
¡û
>W1610047604
BBDK01000036
Unclassified
Acidiplasma cupricumulans JCM 13668 [BBDK]
17451
17378
-
Ala
TGC
[ENA]
¡û
>W1610642298
LJCQ01000161
Unclassified
Acidiplasma aeolicum V [LJCQ]
494
567
+
Ala
TGC
[ENA]
¡û
>W1610670471
LKBG01000240
Unclassified
Acidiplasma aeolicum VT [LKBG]
11194
11121
-
Ala
TGC
[ENA]
¡û
>W1610670494
LKBH01000084
Unclassified
Acidiplasma cupricumulans BH2 [LKBH]
21677
21604
-
Ala
TGC
[ENA]
¡û
Identical group No.686535 (3 seq.)
>A173000151
CP004145
Unclassified
Ferroplasma acidarmanus Fer1 [CP004145]
936198
936125
-
Ala
TGC
-
¡û
>A173000304
CP015363
Unclassified
Ferroplasma acidiphilum Y [CP015363]
1796243
1796170
-
Ala
TGC
-
¡û
>W1630000013
AABC05000011
Unclassified
Ferroplasma acidarmanus fer1 [AABC]
63264
63191
-
Ala
TGC
[ENA]
¡û
Identical group No.706839 (3 seq.)
>At1984
AL139299
Unclassified
Thermoplasma acidophilum [AL139299]
1504910
1504981
+
Ala
TGC
[Ensembl]
¡û
>At2010
BA000011
Unclassified
Thermoplasma volcanium GSS1 [BA000011]
143286
143357
+
Ala
TGC
[Ensembl]
¡û
>W1911681187
QJSM01000042
Unclassified
Thermoplasma sp. Kam2015 [QJSM]
4515
4586
+
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK