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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
Anticodon = CCT
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.272432 (14 seq.)
>W1710865794
LMGY01000016
Gammaproteobacteria
Pseudoxanthomonas sp. Root630 [LMGY]
376965
377041
+
Arg
CCT
[ENA]
¡û
>W131175924
ARJQ01000005
Gammaproteobacteria
Rudaea cellulosilytica DSM 22992 [ARJQ]
809659
809735
+
Arg
CCT
[ENA]
¡û
>W131226648
AUEN01000001
Gammaproteobacteria
Lysobacter sp. URHA0019 [AUEN]
345223
345147
-
Arg
CCT
[ENA]
¡û
>W141215615
AZUH01000016
Gammaproteobacteria
Pseudoxanthomonas suwonensis J42 [AZUH]
28033
28109
+
Arg
CCT
[ENA]
¡û
>W141216682
AZVB01000010
Gammaproteobacteria
Pseudoxanthomonas sp. J35 [AZVB]
67789
67713
-
Arg
CCT
[ENA]
¡û
>WENV170680643
LFEF01006777
[LFEF] freshwater metagenome; waterbloom
900
976
+
Arg
CCT
[ENA]
¢þ
>C181200053
CP031413
Gammaproteobacteria
Lysobacter sp. TY2-98 [CP031413]
1736680
1736756
+
Arg
CCT
-
¡û
>W1810195894
PKSO01000002
Gammaproteobacteria
Pseudoxanthomonas sp. KAs_5_3 [PKSO]
748782
748706
-
Arg
CCT
[ENA]
¡û
>SRA1026542
SRR035085.224933
454 Sequencing (SRP001806)
458
382
-
Arg
CCT
[SRA]
>W1510018845
BBUM02000163
Gammaproteobacteria
Mizugakiibacter sediminis skMP5 [BBUM]
6146
6222
+
Arg
CCT
[ENA]
¡û
>C11118138
CP002446
Gammaproteobacteria
Pseudoxanthomonas suwonensis 11-1 [CP002446]
1366882
1366958
+
Arg
CCT
[Ensembl]
¡û
>W1610728140
LMGY01000016
Gammaproteobacteria
Pseudoxanthomonas sp. Root630 [LMGY]
376965
377041
+
Arg
CCT
[ENA]
¡û
>WENV080065
AATO01002954
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
1429
1507
+
Arg
CCT
[ENA]
>W1710579386
FPCI01000001
Gammaproteobacteria
Pseudoxanthomonas sp. YR558 [FPCI]
721950
722026
+
Arg
CCT
[ENA]
¡û
Identical group No.659006 (30 seq.)
>W1711385710
MEEN01000002
Bacteroidota
Niastella sp. SCN 39-18 [MEEN]
49947
50021
+
Arg
CCT
[ENA]
¡û
>W1711503784
MKTX01000014
Bacteroidota
Sphingobacteriales bacterium 39-19 [MKTX]
57256
57330
+
Arg
CCT
[ENA]
¡û
>WENV170555507
CXWL01000825
[CXWL] groundwater metagenome; biofilm material
158375
158449
+
Arg
CCT
[ENA]
¢þ
>WENV170955762
MJUK01014012
[MJUK] soil metagenome; viral particles from soil sample TG5
152
76
-
Arg
CCT
[ENA]
¢þ
>WENV170982283
MWVU01052812
[MWVU] soil metagenome; TG1-5 sample; Antarctic (ecotone) soil
549
473
-
Arg
CCT
[ENA]
¢þ
>WENV170982328
MWVU01065728
[MWVU] soil metagenome; TG1-5 sample; Antarctic (ecotone) soil
154
80
-
Arg
CCT
[ENA]
¢þ
>WENV170983666
MWVV01070190
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
379
453
+
Arg
CCT
[ENA]
¢þ
>WENV170984654
MWVV01384082
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
313
387
+
Arg
CCT
[ENA]
¢þ
>WENV170984830
MWVW01000432
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
4866
4942
+
Arg
CCT
[ENA]
¢þ
>WENV170984911
MWVW01003309
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
567
493
-
Arg
CCT
[ENA]
¢þ
>WENV170984981
MWVW01006974
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
1106
1178
+
Arg
CCT
[ENA]
¢þ
>WENV170985339
MWVW01071135
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
210
136
-
Arg
CCT
[ENA]
¢þ
>WENV170985474
MWVW01117899
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
52
126
+
Arg
CCT
[ENA]
¢þ
>WENV170985525
MWVW01137267
[MWVW] soil metagenome; MtG22-5 sample; Antarctic (ecotone) soil
171
97
-
Arg
CCT
[ENA]
¢þ
>WENV170985920
MWVX01006955
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
668
742
+
Arg
CCT
[ENA]
¢þ
>WENV170986887
MWVX01092670
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
55
129
+
Arg
CCT
[ENA]
¢þ
>WENV170986888
MWVX01092670
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
271
345
+
Arg
CCT
[ENA]
¢þ
>WENV170987111
MWVX01125192
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
55
129
+
Arg
CCT
[ENA]
¢þ
>WENV170987671
MWVX01242672
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
54
128
+
Arg
CCT
[ENA]
¢þ
>WENV170987968
MWVX01323746
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
341
267
-
Arg
CCT
[ENA]
¢þ
>WENV170988204
MWVX01407263
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
87
13
-
Arg
CCT
[ENA]
¢þ
>WENV170988637
MWVX01564186
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
132
58
-
Arg
CCT
[ENA]
¢þ
>WENV170995288
MWWF01000105
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
5299
5225
-
Arg
CCT
[ENA]
¢þ
>WENV170995725
MWWF01043910
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
177
103
-
Arg
CCT
[ENA]
¢þ
>WENV170995741
MWWF01047605
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
27
101
+
Arg
CCT
[ENA]
¢þ
>WENV170997412
MWWG01120741
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
238
166
-
Arg
CCT
[ENA]
¢þ
>WENV170998242
MWWJ01000136
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
7354
7430
+
Arg
CCT
[ENA]
¢þ
>WENV170999216
MWWK01005575
[MWWK] soil metagenome; BG12-3 sample; Antarctic (ecotone) soil
834
908
+
Arg
CCT
[ENA]
¢þ
>ENV09000804
ABSP01040850
Freshwater sediment metagenome lwMethane_C1
272
346
+
Arg
CCT
[ENA]
¡û
>WENV080064
AATO01002925
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
824
748
-
Arg
CCT
[ENA]
Identical group No.660237 (8 seq.)
>W1712082031
NHOS01000003
Bacteroidota
Flavobacteriaceae bacterium JJC [NHOS]
224933
224859
-
Arg
CCT
[ENA]
¡û
>W141291552
JASZ01000338
Bacteroidota
Kaistella haifensis DSM 19056 [JASZ]
3452
3524
+
Arg
CCT
[ENA]
¡û
>WENV170010192
APMI01010666
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
419
493
+
Arg
CCT
[ENA]
¢þ
>C191116465
CP033933
Bacteroidota
Kaistella haifensis G0079 [CP033933]
2179168
2179240
+
Arg
CCT
-
¡û
>W1910933664
NIUY01000002
Bacteroidota
Chryseobacterium sp. VAUSW3 [NIUY]
200544
200616
+
Arg
CCT
[ENA]
¡û
>W1610095112
CYUH01000015
Bacteroidota
Chryseobacterium senegalense FF12 [CYUH]
1093137
1093209
+
Arg
CCT
[ENA]
¡û
>WENV080058
AATO01002602
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
165
91
-
Arg
CCT
[ENA]
>W1710097907
CYUH01000015
Bacteroidota
Chryseobacterium senegalense FF12 [CYUH]
1093137
1093209
+
Arg
CCT
[ENA]
¡û
Identical group No.707309 (4 seq.)
>W141426782
JEMX01000019
Betaproteobacteria
Candidatus Accumulibacter appositus sp. BA-92 [JEMX]
41448
41520
+
Arg
CCT
[ENA]
¡û
>W141426820
JEMY01000013
Betaproteobacteria
Candidatus Accumulibacter regalis sp. BA-93 [JEMY]
110416
110490
+
Arg
CCT
[ENA]
¡û
>W1511592950
LBIU01000314
Betaproteobacteria
Candidatus Accumulibacter adiacens phosphatis [LBIU]
4400
4328
-
Arg
CCT
[ENA]
¡û
>WENV080060
AATO01002756
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
517
441
-
Arg
CCT
[ENA]
Identical group No.712765 (8 seq.)
>WENV181188132
OEOE01030363
[OEOE] activated sludge metagenome; Activated Sludge
122
194
+
Arg
CCT
[ENA]
¢þ
>C10101135
CP001715
Betaproteobacteria
Candidatus Accumulibacter regalis [CP001715]
2812489
2812417
-
Arg
CCT
[Ensembl]
¡û
>W1610506440
FLQX01000157
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
5853
5779
-
Arg
CCT
[ENA]
¡û
>WENV079741
AATN01000116
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
2803
2729
-
Arg
CCT
[ENA]
>WENV079851
AATN01003142
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
1048
1122
+
Arg
CCT
[ENA]
>WENV079952
AATO01000005
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
85884
85958
+
Arg
CCT
[ENA]
>WENV080159
AATO01010124
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
643
717
+
Arg
CCT
[ENA]
>W1710498943
FLQX01000157
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
5853
5779
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK