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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Anticodon = TTT
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.472099 (16 seq.)
>WENV180189262
OAWX01032020
[OAWX] human gut metagenome; faeces
246
320
+
Lys
TTT
[ENA]
¢þ
>WENV180677999
OCVV011841495
[OCVV] gut metagenome; gut
83
11
-
Lys
TTT
[ENA]
¢þ
>WENV180678000
OCVV011841495
[OCVV] gut metagenome; gut
83
11
-
Lys
TTT
[ENA]
¢þ
>WENV180889860
ODMN01193811
[ODMN] human metagenome; G_DNA_Supragingival plaque
115
41
-
Lys
TTT
[ENA]
¢þ
>WENV181556413
OGIU01022848
[OGIU] metagenome; Human gut stool
476
550
+
Lys
TTT
[ENA]
¢þ
>WENV181574643
OGJT01001982
[OGJT] metagenome; Human gut stool
3407
3335
-
Lys
TTT
[ENA]
¢þ
>WENV181597603
OGKZ01008026
[OGKZ] metagenome; Human gut stool
211
139
-
Lys
TTT
[ENA]
¢þ
>WENV181634476
OGMW01003492
[OGMW] metagenome; Human gut stool
4105
4033
-
Lys
TTT
[ENA]
¢þ
>WENV181641673
OGNF01010659
[OGNF] metagenome; Human gut stool
1677
1605
-
Lys
TTT
[ENA]
¢þ
>WENV181982252
OHAG01041604
[OHAG] human gut metagenome; faeces
208
134
-
Lys
TTT
[ENA]
¢þ
>WENV183186188
OLPO01000123
[OLPO] human gut metagenome; faeces
55417
55345
-
Lys
TTT
[ENA]
¢þ
>WENV183296316
OLSL01030764
[OLSL] human gut metagenome; faeces
939
1013
+
Lys
TTT
[ENA]
¢þ
>WENV170659188
JXWR01001386
[JXWR] soil metagenome; rice field; ambient CO2
43682
43754
+
Lys
TTT
[ENA]
¢þ
>WENV170659988
JXWS01073478
[JXWS] soil metagenome; rice field; elevated CO2
429
503
+
Lys
TTT
[ENA]
¢þ
>CHL1810059690
MG775430
Viridiplantae
Codonopsis lanceolata (MG775430)
248236
248164
-
Lys
TTT
[ENA]
¡û
>R05100128
AP008218
Plant
Oryza sativa Japonica Group
20677439
20677514
+
Lys
TTT
[RAP-DB]
¡û
Identical group No.554071 (2 seq.)
>R05100315
AP008210
Plant
Oryza sativa Japonica Group
22599780
22599855
+
Lys
TTT
[RAP-DB]
¡û
>WENV11100053
ADWX01016306
Ant fungus garden metagenome, Atta colombica fungus garden
46
119
+
Lys
TTT
[ENA]
¡û
Identical group No.564777 (1 seq.)
>R05100450
AP008212
Plant
Oryza sativa Japonica Group
4609950
4609875
-
Lys
TTT
[RAP-DB]
¡û
Identical group No.622087 (1 seq.)
>R05100407
AP008211
Plant
Oryza sativa Japonica Group
22675204
22675127
-
Lys
TTT
[RAP-DB]
¡û
Identical group No.659350 (21 seq.)
>CHL1810012800
KJ746599
Viridiplantae
Picocystis salinarum (KJ746599)
35735
35664
-
Lys
TTT
[ENA]
¡û
>R05900032
AP008210
Plant
Oryza sativa Japonica Group
9154084
9156647
+
Lys
TTT
[RAP-DB]
¡û
>CHL090800002
AB042240
Viridiplantae
Triticum aestivum
3944
1384
-
Lys
TTT
[ENA]
¡û
>CHL090800015
AE009947
Viridiplantae
Saccharum hybrid cultivar SP-80-3280
65565
63014
-
Lys
TTT
[ENA]
¡û
>CHL090800019
AJ271079
Viridiplantae
Oenothera elata subsp. hookeri
4119
1577
-
Lys
TTT
[ENA]
¡û
>CHL090800034
AJ970307
Viridiplantae
Cucumis sativus
4129
1559
-
Lys
TTT
[ENA]
¡û
>CHL090800051
AP006714
Viridiplantae
Saccharum officinarum
3939
1388
-
Lys
TTT
[ENA]
¡û
>CHL090800053
AP006728
Viridiplantae
Oryza nivara
3931
1371
-
Lys
TTT
[ENA]
¡û
>CHL090800057
AP008956
Viridiplantae
Populus alba
4314
1686
-
Lys
TTT
[ENA]
¡û
>CHL090800103
AY522329
Viridiplantae
Oryza sativa Indica Group
3932
1372
-
Lys
TTT
[ENA]
¡û
>CHL090800111
AY522331
Viridiplantae
Oryza sativa (japonica cultivar-group) isolate PA64S
3932
1372
-
Lys
TTT
[ENA]
¡û
>CHL090800130
AY928077
Viridiplantae
Zea mays cultivar B73
3937
1387
-
Lys
TTT
[ENA]
¡û
>CHL090800152
DQ317523
Viridiplantae
Glycine max
4286
1637
-
Lys
TTT
[ENA]
¡û
>CHL090800199
DQ424856
Viridiplantae
Vitis vinifera
4293
1721
-
Lys
TTT
[ENA]
¡û
>CHL090800225
DQ865975
Viridiplantae
Cucumis sativus cultivar GY14
4178
1608
-
Lys
TTT
[ENA]
¡û
>CHL090800231
DQ865976
Viridiplantae
Cucumis sativus strain CHIPPER
4178
1608
-
Lys
TTT
[ENA]
¡û
>CHL090800272
EF115541
Viridiplantae
Hordeum vulgare subsp. vulgare
4461
1909
-
Lys
TTT
[ENA]
¡û
>CHL090800280
EF115542
Viridiplantae
Sorghum bicolor
4464
1910
-
Lys
TTT
[ENA]
¡û
>CHL090800288
EF115543
Viridiplantae
Agrostis stolonifera
4480
1914
-
Lys
TTT
[ENA]
¡û
>CHL090800309
EF489041
Viridiplantae
Populus trichocarpa
4310
1680
-
Lys
TTT
[ENA]
¡û
>CHL090800330
X15901
Viridiplantae
Oryza sativa Japonica Group
3932
1372
-
Lys
TTT
[ENA]
¡û
Identical group No.687892 (2 seq.)
>R05100090
AP008217
Plant
Oryza sativa Japonica Group
5867446
5867520
+
Lys
TTT
[RAP-DB]
¡û
>R05100117
AP008218
Plant
Oryza sativa Japonica Group
4693811
4693885
+
Lys
TTT
[RAP-DB]
¡û
Identical group No.706786 (4 seq.)
>R05100037
AP008207
Plant
Oryza sativa Japonica Group
42417250
42417324
+
Lys
TTT
[RAP-DB]
¡û
>R05100175
AP008208
Plant
Oryza sativa Japonica Group
9429411
9429485
+
Lys
TTT
[RAP-DB]
¡û
>R05100443
AP008212
Plant
Oryza sativa Japonica Group
18864464
18864390
-
Lys
TTT
[RAP-DB]
¡û
>R05100548
AP008215
Plant
Oryza sativa Japonica Group
21433696
21433620
-
Lys
TTT
[RAP-DB]
¡û
Identical group No.706792 (1 seq.)
>AD01000336
NC_003075
Plant
Arabidopsis thaliana
14032490
14032561
+
Lys
TTT
[TAIR]
¡û
Identical group No.735136 (10 seq.)
>AD01000104
NC_003070
Plant
Arabidopsis thaliana
29833117
29833188
+
Lys
TTT
[TAIR]
¡û
>AD01000105
NC_003070
Plant
Arabidopsis thaliana
29833717
29833790
+
Lys
TTT
[TAIR]
¡û
>AD01000217
NC_003071
Plant
Arabidopsis thaliana
11774923
11774852
-
Lys
TTT
[TAIR]
¡û
>AD01000247
NC_003074
Plant
Arabidopsis thaliana
3942006
3942077
+
Lys
TTT
[TAIR]
¡û
>AD01000275
NC_003074
Plant
Arabidopsis thaliana
19924377
19924448
+
Lys
TTT
[TAIR]
¡û
>AD01000391
NC_003076
Plant
Arabidopsis thaliana
4471048
4471119
+
Lys
TTT
[TAIR]
¡û
>AD01000416
NC_003076
Plant
Arabidopsis thaliana
21401144
21401215
+
Lys
TTT
[TAIR]
¡û
>AD01000428
NC_003076
Plant
Arabidopsis thaliana
24667281
24667355
+
Lys
TTT
[TAIR]
¡û
>AD01000447
NC_003076
Plant
Arabidopsis thaliana
19744246
19744175
-
Lys
TTT
[TAIR]
¡û
>AD01000451
NC_003076
Plant
Arabidopsis thaliana
17839656
17839585
-
Lys
TTT
[TAIR]
¡û
Identical group No.735139 (1 seq.)
>AD01000241
NC_003074
Plant
Arabidopsis thaliana
2285602
2285673
+
Lys
TTT
[TAIR]
¡û
Identical group No.741474 (1 seq.)
>AD01000413
NC_003076
Plant
Arabidopsis thaliana
19641603
19641675
+
Lys
TTT
[TAIR]
¡û
Identical group No.772281 (1 seq.)
>R05900076
AP008216
Plant
Oryza sativa Japonica Group
11209284
11206721
-
Lys
TTT
[RAP-DB]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK