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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
51 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170256473
CEQX01092706
158246
Gammaproteobacteria
GTC
Asp
>WENV170257492
CEQX01330526
176064
Gammaproteobacteria
CAT
Met
>WENV170257400
CEQX01295723
297858
Gammaproteobacteria
TGC
Ala
>WENV170256439
CEQX01088193
189904
Gammaproteobacteria
CCA
Trp
>WENV170256245
CEQX01064377
318157
Gammaproteobacteria
GTT
Asn
>WENV170256067
CEQX01048696
118218
Gammaproteobacteria
TAG
Leu
>WENV170256392
CEQX01083170
178469
Gammaproteobacteria
CAT
Met
>WENV170255781
CEQX01021878
178469
Gammaproteobacteria
CAT
Met
>WENV170256317
CEQX01072922
180053
Gammaproteobacteria
CAT
Met
>WENV170256997
CEQX01148615
197233
Gammaproteobacteria
CAT
Met
>WENV170256479
CEQX01093317
353123
Gammaproteobacteria
CCA
Trp
>WENV170255919
CEQX01035063
353123
Gammaproteobacteria
CCA
Trp
>WENV170255994
CEQX01040677
283222
Gammaproteobacteria
GTG
His
>WENV170255623
CEQX01010970
178538
Gammaproteobacteria
GTC
Asp
>WENV170256447
CEQX01089583
343342
Gammaproteobacteria
>WENV170256688
CEQX01117953
73501
Gammaproteobacteria
GAG
Leu
>WENV170255736
CEQX01018247
140925
Gammaproteobacteria
GTA
Tyr
>WENV170255931
CEQX01035747
178470
Gammaproteobacteria
ACG
Arg
>WENV170255566
CEQX01005434
282550
Gammaproteobacteria
TAC
Val
>WENV170255956
CEQX01037438
283227
Gammaproteobacteria
TAC
Val
>WENV170256338
CEQX01076408
283227
Gammaproteobacteria
TAC
Val
>WENV170257602
CEQX01353541
178535
Gammaproteobacteria
CCT
Arg
>WENV170256805
CEQX01133026
74339
Gammaproteobacteria
GAG
Leu
>WENV170257051
CEQX01152315
351236
Gammaproteobacteria
TTT
Lys
>WENV170256505
CEQX01095933
73498
Gammaproteobacteria
CAA
Leu
>WENV170256429
CEQX01087690
20487
Gammaproteobacteria
TGA
Ser
>WENV170256627
CEQX01111541
480516
Gammaproteobacteria
GCA
Cys
>WENV170256312
CEQX01072240
184459
Gammaproteobacteria
CAT
Met
>WENV170255743
CEQX01018504
178541
Gammaproteobacteria
CGG
Pro
>WENV170255510
CEQX01000565
178466
Gammaproteobacteria
CCA
Trp
>WENV170255737
CEQX01018247
481325
Gammaproteobacteria
TCC
Gly
>WENV170255872
CEQX01030464
118413
Gammaproteobacteria
TAG
Leu
>WENV170257012
CEQX01149444
401684
Gammaproteobacteria
CCT
Arg
>WENV170255955
CEQX01037438
283226
Gammaproteobacteria
TAC
Val
>WENV170256273
CEQX01067415
74048
Gammaproteobacteria
CAA
Leu
>WENV170256673
CEQX01116620
178467
Gammaproteobacteria
GGG
Pro
>WENV170256635
CEQX01112543
306288
Gammaproteobacteria
GCC
Gly
>WENV170255537
CEQX01003343
306288
Gammaproteobacteria
GCC
Gly
>WENV170256637
CEQX01112765
346373
Gammaproteobacteria
GAA
Phe
>WENV170255558
CEQX01005086
400373
Gammaproteobacteria
CCG
Arg
>WENV170255953
CEQX01037213
29695
Gammaproteobacteria
GGA
Ser
>WENV170255948
CEQX01037038
180680
Gammaproteobacteria
GAC
Val
>WENV170255633
CEQX01011389
176301
Gammaproteobacteria
GAT
Ile
>WENV170255773
CEQX01021335
317792
Gammaproteobacteria
TGC
Ala
>WENV170256614
CEQX01109572
317792
Gammaproteobacteria
TGC
Ala
>WENV170255565
CEQX01005427
118207
Gammaproteobacteria
GAG
Leu
>WENV170256970
CEQX01146681
176518
Gammaproteobacteria
CAT
Met
>WENV170256583
CEQX01107031
8635
Gammaproteobacteria
GCT
Ser
>WENV170255811
CEQX01025952
81474
Gammaproteobacteria
CAG
Leu
>WENV170255735
CEQX01018247
282902
Gammaproteobacteria
TGT
Thr
>WENV170256475
CEQX01093048
140861
Gammaproteobacteria
GTA
Tyr
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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