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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
53 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170297757
CESF01002008
306288
Gammaproteobacteria
GCC
Gly
>WENV170297764
CESF01003014
306288
Gammaproteobacteria
GCC
Gly
>WENV170297765
CESF01003014
480516
Gammaproteobacteria
GCA
Cys
>WENV170297774
CESF01004276
287057
Gammaproteobacteria
GAA
Phe
>WENV170297790
CESF01006678
283486
Gammaproteobacteria
TGT
Thr
>WENV170297793
CESF01006871
184446
Gammaproteobacteria
GAC
Val
>WENV170297803
CESF01007915
283226
Gammaproteobacteria
TAC
Val
>WENV170297804
CESF01007915
283227
Gammaproteobacteria
TAC
Val
>WENV170297821
CESF01011562
180680
Gammaproteobacteria
GAC
Val
>WENV170297831
CESF01012893
313852
Gammaproteobacteria
TTC
Glu
>WENV170297832
CESF01012893
313571
Gammaproteobacteria
GCC
Gly
>WENV170297849
CESF01014591
197506
Gammaproteobacteria
CAT
Met
>WENV170297855
CESF01015179
292194
Gammaproteobacteria
GGT
Thr
>WENV170297860
CESF01015689
180679
Gammaproteobacteria
CCA
Trp
>WENV170297877
CESF01017618
158246
Gammaproteobacteria
GTC
Asp
>WENV170297885
CESF01019263
283225
Gammaproteobacteria
TGT
Thr
>WENV170297929
CESF01024123
178467
Gammaproteobacteria
GGG
Pro
>WENV170298014
CESF01035866
176214
Gammaproteobacteria
ACG
Arg
>WENV170298015
CESF01035866
176214
Gammaproteobacteria
ACG
Arg
>WENV170298033
CESF01038293
20664
Gammaproteobacteria
GCT
Ser
>WENV170298044
CESF01040416
178469
Gammaproteobacteria
CAT
Met
>WENV170298056
CESF01041031
296670
Gammaproteobacteria
TGT
Thr
>WENV170298061
CESF01042321
29695
Gammaproteobacteria
GGA
Ser
>WENV170298190
CESF01064848
399250
Gammaproteobacteria
TCC
Gly
>WENV170298191
CESF01064848
281276
Gammaproteobacteria
GGT
Thr
>WENV170298216
CESF01070295
313571
Gammaproteobacteria
GCC
Gly
>WENV170298220
CESF01071452
179283
Gammaproteobacteria
ACG
Arg
>WENV170298240
CESF01075649
29834
Gammaproteobacteria
GCT
Ser
>WENV170298241
CESF01075649
176662
Gammaproteobacteria
ACG
Arg
>WENV170298262
CESF01080468
180679
Gammaproteobacteria
CCA
Trp
>WENV170298318
CESF01089500
400373
Gammaproteobacteria
CCG
Arg
>WENV170298331
CESF01093061
178434
Gammaproteobacteria
GAC
Val
>WENV170298347
CESF01096472
20968
Gammaproteobacteria
TGA
Ser
>WENV170298349
CESF01097502
307357
Gammaproteobacteria
TGC
Ala
>WENV170298383
CESF01107198
178475
Gammaproteobacteria
GAC
Val
>WENV170298384
CESF01107198
178475
Gammaproteobacteria
GAC
Val
>WENV170298396
CESF01109690
481314
Gammaproteobacteria
GCA
Cys
>WENV170298405
CESF01111831
176520
Gammaproteobacteria
CAT
Met
>WENV170298410
CESF01113594
306288
Gammaproteobacteria
GCC
Gly
>WENV170298421
CESF01116465
180681
Gammaproteobacteria
TGG
Pro
>WENV170298450
CESF01119988
74048
Gammaproteobacteria
CAA
Leu
>WENV170298472
CESF01123980
73123
Gammaproteobacteria
CAA
Leu
>WENV170298514
CESF01132214
178169
Gammaproteobacteria
GAC
Val
>WENV170298525
CESF01134431
287057
Gammaproteobacteria
GAA
Phe
>WENV170298538
CESF01135227
178466
Gammaproteobacteria
CCA
Trp
>WENV170298555
CESF01136772
176478
Gammaproteobacteria
CAT
Met
>WENV170298692
CESF01202459
184467
Gammaproteobacteria
TCT
Arg
>WENV170298693
CESF01202459
281283
Gammaproteobacteria
GTG
His
>WENV170298719
CESF01223951
176663
Gammaproteobacteria
GGG
Pro
>WENV170298742
CESF01235643
76195
Gammaproteobacteria
CAA
Leu
>WENV170298770
CESF01263378
284706
Gammaproteobacteria
GTT
Asn
>WENV170298848
CESF01302080
291402
Gammaproteobacteria
GTG
His
>WENV170298850
CESF01302332
281282
Gammaproteobacteria
TTC
Glu
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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