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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
51 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>WENV170761885
LUMW01000049
73523
Alphaproteobacteria
CAG
Leu
>WENV170761938
LUMW01000138
480900
Alphaproteobacteria
GCA
Cys
>WENV170761956
LUMW01000204
400517
Alphaproteobacteria
GGT
Thr
>WENV170761978
LUMW01000279
201940
Alphaproteobacteria
CAT
Met
>WENV170761995
LUMW01000349
193463
Alphaproteobacteria
CCT
Arg
>WENV170762014
LUMW01000449
20437
Alphaproteobacteria
GGA
Ser
>WENV170762022
LUMW01000487
118150
Alphaproteobacteria
TAG
Leu
>WENV170762052
LUMW01000596
296698
Alphaproteobacteria
CGC
Ala
>WENV170762087
LUMW01000796
192131
Alphaproteobacteria
GTC
Asp
>WENV170762150
LUMW01001377
282977
Alphaproteobacteria
CAT
Met
>WENV170762168
LUMW01001643
143406
Alphaproteobacteria
TAG
Leu
>WENV170762190
LUMW01001934
481802
Alphaproteobacteria
TCC
Gly
>WENV170762198
LUMW01002062
398996
Alphaproteobacteria
GCC
Gly
>WENV170762199
LUMW01002062
428327
Alphaproteobacteria
GCC
Gly
>WENV170762227
LUMW01002550
178503
Alphaproteobacteria
GGG
Pro
>WENV170762233
LUMW01002683
439135
Alphaproteobacteria
CAC
Val
>WENV170762239
LUMW01002801
399480
Alphaproteobacteria
GAA
Phe
>WENV170762243
LUMW01002966
284796
Alphaproteobacteria
CGT
Thr
>WENV170762263
LUMW01003594
427571
Alphaproteobacteria
GCC
Gly
>WENV170762272
LUMW01003761
400384
Alphaproteobacteria
TTC
Glu
>WENV170762286
LUMW01004063
100185
Alphaproteobacteria
GAG
Leu
>WENV170762287
LUMW01004064
283257
Alphaproteobacteria
TTT
Lys
>WENV170762289
LUMW01004078
121990
Alphaproteobacteria
TAG
Leu
>WENV170762293
LUMW01004173
432650
Alphaproteobacteria
GAA
Phe
>WENV170762302
LUMW01004372
178510
Alphaproteobacteria
ACG
Arg
>WENV170762308
LUMW01004604
77412
Alphaproteobacteria
CAG
Leu
>WENV170762315
LUMW01004900
283510
Alphaproteobacteria
TTT
Lys
>WENV170762343
LUMW01005845
281676
Alphaproteobacteria
TAC
Val
>WENV170762354
LUMW01006184
400515
Alphaproteobacteria
GAC
Val
>WENV170762359
LUMW01006494
140892
Alphaproteobacteria
TAG
Leu
>WENV170762416
LUMW01007703
190614
Alphaproteobacteria
TGG
Pro
>WENV170762424
LUMW01008098
398996
Alphaproteobacteria
GCC
Gly
>WENV170762426
LUMW01008125
29727
Alphaproteobacteria
CGA
Ser
>WENV170762429
LUMW01008215
75222
Alphaproteobacteria
GAG
Leu
>WENV170762437
LUMW01008529
29655
Alphaproteobacteria
TGA
Ser
>WENV170762438
LUMW01008638
100184
Alphaproteobacteria
CAG
Leu
>WENV170762468
LUMW01010240
399000
Alphaproteobacteria
TTC
Glu
>WENV170762484
LUMW01010869
398994
Alphaproteobacteria
GTT
Asn
>WENV170762535
LUMW01013393
400384
Alphaproteobacteria
TTC
Glu
>WENV170762539
LUMW01013565
29495
Alphaproteobacteria
GCT
Ser
>WENV170762540
LUMW01013577
140893
Alphaproteobacteria
CAA
Leu
>WENV170762547
LUMW01014248
29701
Alphaproteobacteria
CGA
Ser
>WENV170762587
LUMW01016878
286018
Alphaproteobacteria
CCA
Trp
>WENV170762592
LUMW01017226
481073
Alphaproteobacteria
CTG
Gln
>WENV170762608
LUMW01018595
221998
Alphaproteobacteria
GAT
Ile
>WENV170762624
LUMW01019449
179386
Alphaproteobacteria
TCT
Arg
>WENV170762643
LUMW01020937
400514
Alphaproteobacteria
TTG
Gln
>WENV170762695
LUMW01027227
29701
Alphaproteobacteria
CGA
Ser
>WENV170762699
LUMW01028063
481326
Alphaproteobacteria
GCA
Cys
>WENV170762715
LUMW01030434
398996
Alphaproteobacteria
GCC
Gly
>WENV170762792
LUMW01040416
179390
Alphaproteobacteria
TGG
Pro
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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