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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes obtained from an environmental sample assignable to Identical sequence group.
HIT:
16 sequence(s).
Download Sequence
View ClustalW result
Reliable assignment
Tentative assignment
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
>SRA1003778
SRR002327.180594
481454
Betaproteobacteria
GCA
Cys
>SRA1003654
SRR002327.98037
281431
Betaproteobacteria
GTT
Asn
>SRA1003624
SRR002327.71906
281431
Betaproteobacteria
GTT
Asn
>SRA1003623
SRR002327.71906
281431
Betaproteobacteria
GTT
Asn
>SRA1003822
SRR002327.210811
307931
Betaproteobacteria
TTC
Glu
>SRA1003766
SRR002327.170224
307931
Betaproteobacteria
TTC
Glu
>SRA1003681
SRR002327.118747
307931
Betaproteobacteria
TTC
Glu
>SRA1003733
SRR002327.150608
284821
Betaproteobacteria
TTT
Lys
>SRA1003618
SRR002327.69569
283940
Betaproteobacteria
TTC
Glu
>SRA1003814
SRR002327.200828
127222
Betaproteobacteria
CAG
Leu
>SRA1003706
SRR002327.135576
56360
Betaproteobacteria
CGA
Ser
>SRA1003772
SRR002327.174806
414048
Betaproteobacteria
GGT
Thr
>SRA1003736
SRR002327.151820
414048
Betaproteobacteria
GGT
Thr
>SRA1003731
SRR002327.148110
414048
Betaproteobacteria
GGT
Thr
>SRA1003720
SRR002327.144374
414048
Betaproteobacteria
GGT
Thr
>SRA1003630
SRR002327.76046
187036
Betaproteobacteria
CAT
Met
Select
Sequence ID
Genome ID
(or Accession No.)
Identical group No.
Phylum/Class
(Sample source for ENV)
Anticodon
AA
Download Sequence
View ClustalW result
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