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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.105464 (79 seq.)
>W1711210163
LXHX01000017
Bacteroidota
Emticicia sp. MM [LXHX]
374
290
-
Leu
TAG
[ENA]
¡û
>W1711504007
MKUD01000045
Bacteroidota
Spirosoma sp. 48-14 [MKUD]
107184
107100
-
Leu
TAG
[ENA]
¡û
>W1711769467
MVEC01000016
Bacteroidota
Spirosoma sp. 209 [MVEC]
130271
130187
-
Leu
TAG
[ENA]
¡û
>C171030727
CP014263
Bacteroidota
Spirosoma montaniterrae DY10 [CP014263]
1430299
1430383
+
Leu
TAG
-
¡û
>C171037547
CP015317
Bacteroidota
Fibrella sp. ES10-3-2-2 [CP015317]
6011177
6011093
-
Leu
TAG
-
¡û
>C171104381
CP020104
Bacteroidota
Spirosoma aerolatum KACC 17939 [CP020104]
3024706
3024790
+
Leu
TAG
-
¡û
>C171104437
CP020105
Bacteroidota
Spirosoma rigui KCTC 12531 [CP020105]
3359159
3359243
+
Leu
TAG
-
¡û
>W131169805
ARFA01000010
Bacteroidota
Spirosoma panaciterrae DSM 21099 [ARFA]
102807
102723
-
Leu
TAG
[ENA]
¡û
>W131169911
ARFC01000028
Bacteroidota
Spirosoma luteum DSM 19990 [ARFC]
51052
51136
+
Leu
TAG
[ENA]
¡û
>W131169942
ARFD01000073
Bacteroidota
Spirosoma spitsbergense DSM 19989 [ARFD]
12887
12971
+
Leu
TAG
[ENA]
¡û
>W131181670
ARPG01000002
Bacteroidota
Rudanella lutea DSM 19387 [ARPG]
5609801
5609885
+
Leu
TAG
[ENA]
¡û
>WENV181222573
OFDC01000011
[OFDC] hot springs metagenome; Water
243568
243486
-
Leu
TAG
[ENA]
¡û
>WENV181222676
OFDC01000074
[OFDC] hot springs metagenome; Water
65496
65414
-
Leu
TAG
[ENA]
¡û
>WENV181226927
OFDN01000449
[OFDN] hot springs metagenome; Water
159
241
+
Leu
TAG
[ENA]
¡û
>W141242799
CAIT01000009
Bacteroidota
Fibrisoma limi BUZ 3 [CAIT]
382293
382209
-
Leu
TAG
[ENA]
¡û
>WENV170984380
MWVV01262097
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
203
119
-
Leu
TAG
[ENA]
¡û
>WENV170998718
MWWJ01087990
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
272
356
+
Leu
TAG
[ENA]
¡û
>C181113136
CP025096
Bacteroidota
Spirosoma pollinicola Ha7 [CP025096]
4718861
4718779
-
Leu
TAG
-
¡û
>W09109902
ABUR01000001
Bacteroidota
Spirosoma linguale DSM 74 [ABUR]
373363
373445
+
Leu
TAG
[ENA]
¡û
>W1910496863
FXVD01000017
Bacteroidota
Emticicia oligotrophica [FXVD]
374
292
-
Leu
TAG
[ENA]
¡û
>W1910496874
FXVF01000078
Bacteroidota
Emticicia oligotrophica [FXVF]
57046
57128
+
Leu
TAG
[ENA]
¡û
>W1911497265
OCNH01000001
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
1549595
1549677
+
Leu
TAG
[ENA]
¡û
>W1911726812
QTJY01000016
Bacteroidota
Larkinella soli MIMbqt9 [QTJY]
58058
57976
-
Leu
TAG
[ENA]
¡û
>W1911766828
QXED01000011
Bacteroidota
Fibrisoma sp. HYT19 [QXED]
45448
45530
+
Leu
TAG
[ENA]
¡û
>W1810195635
PKRS01000002
Bacteroidota
Emticicia sp. TH156 [PKRS]
182198
182116
-
Leu
TAG
[ENA]
¡û
>W1810364375
PVTE01000010
Bacteroidota
Spirosoma oryzae DSM 28354 [PVTE]
209035
209117
+
Leu
TAG
[ENA]
¡û
>W1810692105
QLII01000001
Bacteroidota
Spirosoma telluris HMF3257 [QLII]
1775668
1775586
-
Leu
TAG
[ENA]
¡û
>W1810694563
QLMC01000004
Bacteroidota
Larkinella arboricola DSM 21851 [QLMC]
243522
243604
+
Leu
TAG
[ENA]
¡û
>W1810745151
QOWE01000030
Bacteroidota
Larkinella punicea zzj9 [QOWE]
100141
100057
-
Leu
TAG
[ENA]
¡û
>W1810913045
QVMT01000014
Bacteroidota
Emticicia sp. C21 [QVMT]
31115
31197
+
Leu
TAG
[ENA]
¡û
>SRA1014545
SRR023845.192877
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
33
115
+
Leu
TAG
[SRA]
>SRA1015143
SRR023845.476809
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
171
87
-
Leu
TAG
[SRA]
>C151068607
CP010429
Bacteroidota
Spirosoma radiotolerans DG5A [CP010429]
2563590
2563674
+
Leu
TAG
[Ensembl]
¡û
>SRA1027503
SRR035086.137275
454 Sequencing (SRP001807)
88
172
+
Leu
TAG
[SRA]
>W2010416566
FXVD01000017
Bacteroidota
Emticicia oligotrophica [FXVD]
374
292
-
Leu
TAG
[ENA]
¡û
>W2010416577
FXVF01000078
Bacteroidota
Emticicia oligotrophica [FXVF]
57046
57128
+
Leu
TAG
[ENA]
¡û
>W2010459342
JAAFZH010000004
Bacteroidota
Spirosoma terrae KCTC 52035 [JAAFZH]
28862
28778
-
Leu
TAG
[ENA]
¡û
>W2010468892
JAAGNZ010000001
Bacteroidota
Spirosoma agri KCTC 52727 [JAAGNZ]
2938607
2938689
+
Leu
TAG
[ENA]
¡û
>W2010685265
JACETV010000006
Bacteroidota
Emticicia sp. BO119 [JACETV]
207480
207398
-
Leu
TAG
[ENA]
¡û
>W2011158169
OCNH01000001
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
1549595
1549677
+
Leu
TAG
[ENA]
¡û
>W2011292530
QTJY01000016
Bacteroidota
Larkinella soli MIMbqt9 [QTJY]
58058
57976
-
Leu
TAG
[ENA]
¡û
>W2011324975
QXED01000011
Bacteroidota
Fibrisoma sp. HYT19 [QXED]
45448
45530
+
Leu
TAG
[ENA]
¡û
>W2011477454
RQJO01000009
Bacteroidota
Larkinella rosea KCTC52004 [RQJO]
412487
412569
+
Leu
TAG
[ENA]
¡û
>W2011477500
RQJP01000005
Bacteroidota
Larkinella knui KCTC42998 [RQJP]
646271
646353
+
Leu
TAG
[ENA]
¡û
>W2011532751
SBLB01000002
Bacteroidota
Spirosoma sp. TY50 [SBLB]
612355
612437
+
Leu
TAG
[ENA]
¡û
>W2011557804
SEWF01000005
Bacteroidota
Emticicia sp. 17J42-9 [SEWF]
61435
61353
-
Leu
TAG
[ENA]
¡û
>W2011635130
SMJU01000019
Bacteroidota
Cytophaga sp. DMA-K-7a DMA-k-7a [SMJU]
35791
35873
+
Leu
TAG
[ENA]
¡û
>W2011658067
SODS01000007
Bacteroidota
Larkinella sp. BK230 [SODS]
1454007
1454089
+
Leu
TAG
[ENA]
¡û
>W2011705646
SWJG01000004
Bacteroidota
Spirosoma lacussanchae CPCC 100624 [SWJG]
348771
348689
-
Leu
TAG
[ENA]
¡û
>W2011964834
VBSL01000001
Bacteroidota
Larkinella sp. C7 [VBSL]
340850
340768
-
Leu
TAG
[ENA]
¡û
>W2012146724
VTWS01000002
Bacteroidota
Larkinella sp. MA1 [VTWS]
152754
152672
-
Leu
TAG
[ENA]
¡û
>W2012222081
WAEL01000001
Bacteroidota
Fibrella aestuarina JA25 [WAEL]
912674
912756
+
Leu
TAG
[ENA]
¡û
>W2012311210
WELI01000005
Bacteroidota
Rudanella sp. HX-22-17 [WELI]
515523
515441
-
Leu
TAG
[ENA]
¡û
>W2012326904
WHLY01000002
Bacteroidota
Cytophagaceae bacterium SJW1-29 [WHLY]
3958409
3958327
-
Leu
TAG
[ENA]
¡û
>W2012355866
WJXZ01000015
Bacteroidota
Larkinella terrae KCTC 52001 [WJXZ]
125484
125400
-
Leu
TAG
[ENA]
¡û
>W2012412167
WPIM01000001
Bacteroidota
Spirosoma sp. HMF3257 [WPIM]
1775668
1775586
-
Leu
TAG
[ENA]
¡û
>W2012412212
WPIN01000030
Bacteroidota
Spirosoma sp. HMF4905 [WPIN]
8342
8424
+
Leu
TAG
[ENA]
¡û
>W2110028971
BMKK01000007
Bacteroidota
Emticicia aquatilis CGMCC 1.15958 [BMKK]
126974
126892
-
Leu
TAG
[ENA]
¡û
>W2110047361
BMXF01000002
Bacteroidota
Persicitalea jodogahamensis KCTC 12866 [BMXF]
491128
491046
-
Leu
TAG
[ENA]
¡û
>W2110282962
JACWZY010000036
Bacteroidota
Spirosoma profusum BT702 [JACWZY]
48084
48166
+
Leu
TAG
[ENA]
¡û
>W2110283047
JACXAA010000014
Bacteroidota
Spirosoma validum BT704 [JACXAA]
189887
189969
+
Leu
TAG
[ENA]
¡û
>W2110517346
JAFMYU010000027
Bacteroidota
Fibrella sp. HMF5036 [JAFMYU]
44118
44200
+
Leu
TAG
[ENA]
¡û
>W2110517365
JAFMYV010000004
Bacteroidota
Fibrella sp. HMF5335 [JAFMYV]
171467
171385
-
Leu
TAG
[ENA]
¡û
>W2110517416
JAFMYW010000006
Bacteroidota
Fibrella sp. HMF5405 [JAFMYW]
414542
414460
-
Leu
TAG
[ENA]
¡û
>C201250758
CP051677
Bacteroidota
Spirosoma sp. CJU-R4 [CP051677]
4761818
4761736
-
Leu
TAG
-
¡û
>C211124466
CP059732
Bacteroidota
Spirosoma sp. PL0136 [CP059732]
3933180
3933098
-
Leu
TAG
-
¡û
>C231279284
CP090557
Bacteroidota
Larkinella sp. IE-0392 [CP090557]
2440739
2440657
-
Leu
TAG
-
¡û
>C231312432
CP092074
Bacteroidota
Emticicia sp. 21SJ11W-3 [CP092074]
1709893
1709975
+
Leu
TAG
-
¡û
>C231540561
CP110973
Bacteroidota
Larkinella insperata LMG22510 [CP110973]
656380
656298
-
Leu
TAG
-
¡û
>W2110772284
VFIA01000012
Bacteroidota
Spirosoma utsteinense LMG 31447 [VFIA]
72675
72593
-
Leu
TAG
[ENA]
¡û
>W2110772329
VFIC01000014
Bacteroidota
Spirosoma utsteinense LMG 31448 [VFIC]
38293
38211
-
Leu
TAG
[ENA]
¡û
>C241057061
CP041360
Bacteroidota
Spirosoma sp. KCTC 42546 [CP041360]
3156107
3156189
+
Leu
TAG
-
¡û
>C241140674
CP050063
Bacteroidota
Spirosoma aureum BT328 [CP050063]
4676682
4676764
+
Leu
TAG
-
¡û
>C241156300
CP053435
Bacteroidota
Spirosoma taeanense TS118 [CP053435]
2303679
2303761
+
Leu
TAG
-
¡û
>C10111758
CP001769
Bacteroidota
Spirosoma linguale DSM 74 [CP001769]
1942143
1942225
+
Leu
TAG
[Ensembl]
¡û
>C121003581
CP002961
Bacteroidota
Emticicia oligotrophica DSM 17448 [CP002961]
3132381
3132297
-
Leu
TAG
[Ensembl]
¡û
>C161104986
HE796683
Bacteroidota
Fibrella aestuarina BUZ 2 [HE796683]
5139158
5139074
-
Leu
TAG
[Ensembl]
¡û
>W1610997925
LXHX01000017
Bacteroidota
Emticicia sp. MM [LXHX]
374
290
-
Leu
TAG
[ENA]
¡û
>W1710558185
FOLQ01000002
Bacteroidota
Spirosoma endophyticum [FOLQ]
943840
943756
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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