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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.105473 (107 seq.)
>W1711229209
LXYE02000019
Bacteroidota
Labilibacter marinus [LXYE]
197205
197121
-
Leu
TAG
[ENA]
¡û
>W1711233429
LYBV02000031
Bacteroidota
Saccharicrinis aurantiacus [LYBV]
39527
39445
-
Leu
TAG
[ENA]
¡û
>W1711393470
MEOQ01000020
Bacteroidota
Bacteroidetes bacterium GWF2_43_63 [MEOQ]
70425
70509
+
Leu
TAG
[ENA]
¡û
>W1711502752
MKSZ01000064
Bacteroidota
Bacteroidales bacterium 36-12 [MKSZ]
1573
1491
-
Leu
TAG
[ENA]
¡û
>WENV180036838
FVAA010373566
[FVAA] soil metagenome; Soil
27
108
+
Leu
TAG
[ENA]
¡û
>WENV180277268
OBHV01152903
[OBHV] metagenome; water
129
47
-
Leu
TAG
[ENA]
¡û
>WENV180299744
OBJC01106848
[OBJC] metagenome; water
21
103
+
Leu
TAG
[ENA]
¡û
>WENV180317389
OBKJ01139491
[OBKJ] metagenome; hydrothermal vent
19
101
+
Leu
TAG
[ENA]
¡û
>WENV180375176
OBOK01155437
[OBOK] marine metagenome; seawater
3
85
+
Leu
TAG
[ENA]
¡û
>WENV180876130
ODLT01003263
[ODLT] human metagenome; G_DNA_Stool
7755
7837
+
Leu
TAG
[ENA]
¡û
>WENV180993798
ODVQ01010415
[ODVQ] human metagenome; G_DNA_Stool
1756
1674
-
Leu
TAG
[ENA]
¡û
>WENV181036157
ODXP01000311
[ODXP] human metagenome; G_DNA_Stool
15552
15470
-
Leu
TAG
[ENA]
¡û
>WENV181231787
OFEK01066191
[OFEK] activated sludge metagenome; Anaerobic digester
480
398
-
Leu
TAG
[ENA]
¡û
>WENV181485173
OGFM01000450
[OGFM] metagenome; Human gut stool
18889
18971
+
Leu
TAG
[ENA]
¡û
>W141146894
AWWG01000015
Bacteroidota
Coprobacter fastidiosus NSB1 [AWWG]
25289
25373
+
Leu
TAG
[ENA]
¡û
>WENV181598160
OGLA01003324
[OGLA] metagenome; Human gut stool
1597
1515
-
Leu
TAG
[ENA]
¡û
>WENV181620922
OGMF01001035
[OGMF] metagenome; Human gut stool
8035
8117
+
Leu
TAG
[ENA]
¡û
>WENV181893002
OGXQ01000022
[OGXQ] human gut metagenome; faeces
63239
63321
+
Leu
TAG
[ENA]
¡û
>WENV181969645
OGZX01000155
[OGZX] human gut metagenome; faeces
81709
81791
+
Leu
TAG
[ENA]
¡û
>W141220946
AZYH01000014
Bacteroidota
Saccharicrinis fermentans DSM 9555 = JCM 21142 [AZYH]
1737118
1737202
+
Leu
TAG
[ENA]
¡û
>W141228720
BAMD01000015
Bacteroidota
Saccharicrinis fermentans JCM 21142 [BAMD]
52674
52590
-
Leu
TAG
[ENA]
¡û
>WENV182649928
OJMG01026425
[OJMG] human gut metagenome; feces
1697
1779
+
Leu
TAG
[ENA]
¡û
>WENV182885346
OKSC01005263
[OKSC] human gut metagenome; faeces
4345
4427
+
Leu
TAG
[ENA]
¡û
>WENV183705478
PDWI01001632
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
6126
6208
+
Leu
TAG
[ENA]
¡û
>WENV183709558
PDWI01030142
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3404
3322
-
Leu
TAG
[ENA]
¡û
>WENV183709609
PDWI01030878
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3
85
+
Leu
TAG
[ENA]
¡û
>WENV183710872
PDWI01055245
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1551
1633
+
Leu
TAG
[ENA]
¡û
>WENV183711001
PDWI01058416
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
91
9
-
Leu
TAG
[ENA]
¡û
>WENV183711028
PDWI01059325
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
4
86
+
Leu
TAG
[ENA]
¡û
>WENV183714340
PDWI01178274
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1891
1809
-
Leu
TAG
[ENA]
¡û
>WENV183714702
PDWI01198835
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1235
1317
+
Leu
TAG
[ENA]
¡û
>WENV183716344
PDWI01302384
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
744
661
-
Leu
TAG
[ENA]
¡û
>WENV183717776
PDWJ01001582
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
5641
5723
+
Leu
TAG
[ENA]
¡û
>WENV183720231
PDWJ01029733
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
6
88
+
Leu
TAG
[ENA]
¡û
>WENV183720244
PDWJ01030270
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
998
1080
+
Leu
TAG
[ENA]
¡û
>WENV183720692
PDWJ01041810
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
2396
2478
+
Leu
TAG
[ENA]
¡û
>WENV183722351
PDWJ01121523
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1145
1063
-
Leu
TAG
[ENA]
¡û
>WENV183722393
PDWJ01124776
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
589
507
-
Leu
TAG
[ENA]
¡û
>WENV170006035
AMQJ01016573
[AMQJ] sediment metagenome; subsurface aquifer sediment
4582
4498
-
Leu
TAG
[ENA]
¡û
>WENV170420170
CEUM01298201
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
109
25
-
Leu
TAG
[ENA]
¡û
>WENV170571724
FLOH01000279
[FLOH] marine metagenome; water
9596
9514
-
Leu
TAG
[ENA]
¡û
>WENV170674665
LCWY01000003
[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
28333
28415
+
Leu
TAG
[ENA]
¡û
>WENV170674966
LCWZ01000085
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
9548
9466
-
Leu
TAG
[ENA]
¡û
>WENV170719022
LSQX01099280
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
12947
13031
+
Leu
TAG
[ENA]
¡û
>WENV170724668
LSQX01314048
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
26909
26827
-
Leu
TAG
[ENA]
¡û
>WENV170896116
MDTD01090374
[MDTD] marine metagenome; seawater
2377
2461
+
Leu
TAG
[ENA]
¡û
>WENV170973938
MTKY01051916
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
6221
6137
-
Leu
TAG
[ENA]
¡û
>C181004336
AP018042
Bacteroidota
Labilibaculum antarcticum SPP2 [AP018042]
1735601
1735683
+
Leu
TAG
-
¡û
>C181004379
AP018042
Bacteroidota
Labilibaculum antarcticum SPP2 [AP018042]
5180657
5180575
-
Leu
TAG
-
¡û
>W1910812405
MVDD01000001
Bacteroidota
Labilibaculum filiforme 59.16B [MVDD]
546123
546205
+
Leu
TAG
[ENA]
¡û
>W1910812425
MVDD01000004
Bacteroidota
Labilibaculum filiforme 59.16B [MVDD]
34895
34813
-
Leu
TAG
[ENA]
¡û
>W1910812510
MVDE01000025
Bacteroidota
Labilibaculum manganireducens 59.10-2M [MVDE]
26033
25951
-
Leu
TAG
[ENA]
¡û
>W1910812513
MVDE01000027
Bacteroidota
Labilibaculum manganireducens 59.10-2M [MVDE]
37752
37834
+
Leu
TAG
[ENA]
¡û
>W1911502535
OEPV01000002
Bacteroidota
Dysgonomonas sp. Marseille-P4356 [OEPV]
246922
246840
-
Leu
TAG
[ENA]
¡û
>W1911541898
OPYL01000001
Bacteroidota
Dysgonomonas sp. Marseille-P4361 [OPYL]
647006
647088
+
Leu
TAG
[ENA]
¡û
>W1911718286
QQWG01000004
Bacteroidota
Ancylomarina sp. M1P [QQWG]
247413
247331
-
Leu
TAG
[ENA]
¡û
>W1911718295
QQWG01000006
Bacteroidota
Ancylomarina sp. M1P [QQWG]
185226
185308
+
Leu
TAG
[ENA]
¡û
>W1911737946
QTZN01000005
Bacteroidota
Labilibaculum sp. 44 [QTZN]
343547
343629
+
Leu
TAG
[ENA]
¡û
>W1911737965
QTZN01000011
Bacteroidota
Labilibaculum sp. 44 [QTZN]
35154
35072
-
Leu
TAG
[ENA]
¡û
>W1810587823
QFLI01000002
Bacteroidota
Marinifilum breve JC075 [QFLI]
63670
63752
+
Leu
TAG
[ENA]
¡û
>W1810587851
QFLI01000005
Bacteroidota
Marinifilum breve JC075 [QFLI]
246253
246335
+
Leu
TAG
[ENA]
¡û
>W1810685613
QKZK01000005
Bacteroidota
Breznakibacter xylanolyticus DSM 6779 [QKZK]
160218
160302
+
Leu
TAG
[ENA]
¡û
>W1810871622
QUDD01000029
Bacteroidota
Tannerella sp. AM09-19 [QUDD]
7856
7938
+
Leu
TAG
[ENA]
¡û
>W1810877962
QUHW01000009
Bacteroidota
Tannerella sp. AF04-6 [QUHW]
56428
56510
+
Leu
TAG
[ENA]
¡û
>W2010415442
FXTB01000003
Bacteroidota
Saccharicrinis carchari DSM 27040 [FXTB]
313597
313680
+
Leu
TAG
[ENA]
¡û
>W2010521003
JAANIG010000006
Bacteroidota
Bacteroidales bacterium M08MB [JAANIG]
62228
62312
+
Leu
TAG
[ENA]
¡û
>W2010917336
MVDD01000001
Bacteroidota
Labilibaculum filiforme 59.16B [MVDD]
546123
546205
+
Leu
TAG
[ENA]
¡û
>W2010917356
MVDD01000004
Bacteroidota
Labilibaculum filiforme 59.16B [MVDD]
34895
34813
-
Leu
TAG
[ENA]
¡û
>W2010917441
MVDE01000025
Bacteroidota
Labilibaculum manganireducens 59.10-2M [MVDE]
26033
25951
-
Leu
TAG
[ENA]
¡û
>W2010917444
MVDE01000027
Bacteroidota
Labilibaculum manganireducens 59.10-2M [MVDE]
37752
37834
+
Leu
TAG
[ENA]
¡û
>W2011160932
OEPV01000002
Bacteroidota
Dysgonomonas sp. Marseille-P4356 [OEPV]
246922
246840
-
Leu
TAG
[ENA]
¡û
>W2011170767
OPYL01000001
Bacteroidota
Dysgonomonas sp. Marseille-P4361 [OPYL]
647006
647088
+
Leu
TAG
[ENA]
¡û
>W2011286331
QQWG01000004
Bacteroidota
Ancylomarina sp. M1P [QQWG]
247413
247331
-
Leu
TAG
[ENA]
¡û
>W2011286340
QQWG01000006
Bacteroidota
Ancylomarina sp. M1P [QQWG]
185226
185308
+
Leu
TAG
[ENA]
¡û
>W2011303390
QTZN02000012
Bacteroidota
Labilibaculum sp. 44 [QTZN]
83320
83402
+
Leu
TAG
[ENA]
¡û
>W2011303398
QTZN02000016
Bacteroidota
Labilibaculum sp. 44 [QTZN]
76101
76183
+
Leu
TAG
[ENA]
¡û
>W2011354355
RAPQ01000008
Bacteroidota
Marinifilum flexuosum DSM 21950 [RAPQ]
617968
617886
-
Leu
TAG
[ENA]
¡û
>W2011354397
RAPQ01000011
Bacteroidota
Marinifilum flexuosum DSM 21950 [RAPQ]
327653
327571
-
Leu
TAG
[ENA]
¡û
>W2011417765
RHGE01000004
Bacteroidota
Marinilabiliaceae bacterium JC017 [RHGE]
11294
11212
-
Leu
TAG
[ENA]
¡û
>W2011432440
RJJX01000003
Bacteroidota
Marinifilaceae bacterium T3-2 S1-C [RJJX]
27862
27780
-
Leu
TAG
[ENA]
¡û
>W2011513037
RZNH01000003
Bacteroidota
Marinifilum sp. JC070 [RZNH]
128065
128147
+
Leu
TAG
[ENA]
¡û
>W2011522591
SADB01000001
Bacteroidota
Ancylomarina sp. 16SWW S1-10-2 [SADB]
409527
409445
-
Leu
TAG
[ENA]
¡û
>W2011528153
SAXA01000005
Bacteroidota
Ancylomarina sp. SHSM-M15 [SAXA]
247993
247911
-
Leu
TAG
[ENA]
¡û
>W2011528175
SAXA01000015
Bacteroidota
Ancylomarina sp. SHSM-M15 [SAXA]
291
209
-
Leu
TAG
[ENA]
¡û
>W2011579674
SHKN01000001
Bacteroidota
Ancylomarina subtilis DSM 28825 [SHKN]
741508
741590
+
Leu
TAG
[ENA]
¡û
>W2011579675
SHKN01000001
Bacteroidota
Ancylomarina subtilis DSM 28825 [SHKN]
741966
742048
+
Leu
TAG
[ENA]
¡û
>W2011973285
VCHY01000002
Bacteroidota
Labilibacter sp. CG51 [VCHY]
403430
403512
+
Leu
TAG
[ENA]
¡û
>W2012407707
WOTV01000002
Bacteroidota
Ancylomarina sp. M3P [WOTV]
334769
334687
-
Leu
TAG
[ENA]
¡û
>W2012407731
WOTV01000005
Bacteroidota
Ancylomarina sp. M3P [WOTV]
185226
185308
+
Leu
TAG
[ENA]
¡û
>W2012407798
WOTW01000012
Bacteroidota
Labilibaculum sp. 44 [WOTW]
83320
83402
+
Leu
TAG
[ENA]
¡û
>W2012407806
WOTW01000016
Bacteroidota
Labilibaculum sp. 44 [WOTW]
76101
76183
+
Leu
TAG
[ENA]
¡û
>W2012433247
WTCR01000005
Bacteroidota
Labilibaculum sp. A4 [WTCR]
343547
343629
+
Leu
TAG
[ENA]
¡û
>W2012433266
WTCR01000011
Bacteroidota
Labilibaculum sp. A4 [WTCR]
35154
35072
-
Leu
TAG
[ENA]
¡û
>W2110303748
JADCLQ010000047
Bacteroidota
Dysgonomonas sp. GY75 [JADCLQ]
110173
110091
-
Leu
TAG
[ENA]
¡û
>W2110339687
JADMPX010000010
Bacteroidota
Coprobacter fastidiosus D53t1_180928_F2 [JADMPX]
47688
47770
+
Leu
TAG
[ENA]
¡û
>W2110438258
JAEPKU010000156
Bacteroidota
Dysgonomonas sp. Marseille-P4677 [JAEPKU]
2773
2691
-
Leu
TAG
[ENA]
¡û
>W2110575713
JAGUCO010000001
Bacteroidota
Carboxylicivirga linearis FB218 [JAGUCO]
17409
17327
-
Leu
TAG
[ENA]
¡û
>C201095401
CP041345
Bacteroidota
Bacteroidales bacterium 38-H [CP041345]
417221
417137
-
Leu
TAG
-
¡û
>C211384743
CP081303
Bacteroidota
Prolixibacteraceae bacterium KCTC 25031 [CP081303]
804838
804920
+
Leu
TAG
-
¡û
>C211384745
CP081303
Bacteroidota
Prolixibacteraceae bacterium KCTC 25031 [CP081303]
805083
805165
+
Leu
TAG
-
¡û
>C211384747
CP081303
Bacteroidota
Prolixibacteraceae bacterium KCTC 25031 [CP081303]
805310
805392
+
Leu
TAG
-
¡û
>C211384763
CP081303
Bacteroidota
Prolixibacteraceae bacterium KCTC 25031 [CP081303]
3121535
3121617
+
Leu
TAG
-
¡û
>C211393468
CP082230
Bacteroidota
Prolixibacteraceae bacterium DS1-an-2312 [CP082230]
3713644
3713726
+
Leu
TAG
-
¡û
>C211393544
CP082230
Bacteroidota
Prolixibacteraceae bacterium DS1-an-2312 [CP082230]
1627244
1627162
-
Leu
TAG
-
¡û
>C211393546
CP082230
Bacteroidota
Prolixibacteraceae bacterium DS1-an-2312 [CP082230]
1627000
1626918
-
Leu
TAG
-
¡û
>C231360360
CP095414
Bacteroidota
Bacteroidales bacterium F22 [CP095414]
1660723
1660641
-
Leu
TAG
-
¡û
>W121001169
ACWX01000053
Bacteroidota
Tannerella sp. 6_1_58FAA_CT1 [ACWX]
90229
90145
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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