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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.144882 (86 seq.)
>W1710836225
LLKQ01000001
Campylobacterota
Aliarcobacter thereius LMG 24486 [LLKQ]
1067978
1067902
-
Met
CAT
[ENA]
¡û
>C171057199
CP017111
Campylobacterota
Sulfurospirillum halorespirans DSM 13726 DSM 13726; PCE-M2 [CP017111]
1029591
1029667
+
Met
CAT
-
¡û
>C171059644
CP017258
Campylobacterota
Campylobacter pinnipediorum subsp. caledonicus M341/11/05 [CP017258]
950088
950164
+
Met
CAT
-
¡û
>C171118604
CP021416
Campylobacterota
Sulfurospirillum sp. SL2-1 [CP021416]
915742
915818
+
Met
CAT
-
¡û
>WENV180285690
OBID01626603
[OBID] metagenome; sludge
77
153
+
Met
CAT
[ENA]
¢þ
>WENV180346189
OBLN01036619
[OBLN] sediment metagenome; sediment
700
624
-
Met
CAT
[ENA]
¢þ
>WENV180391214
OBPM01042886
[OBPM] marine metagenome; ENVO:00002010
273
197
-
Met
CAT
[ENA]
¢þ
>WENV181216606
OFCC01007709
[OFCC] metagenome; hydrothermal vent
55
131
+
Met
CAT
[ENA]
¢þ
>WENV181224825
OFDG01007769
[OFDG] metagenome; hydrothermal vent
145
69
-
Met
CAT
[ENA]
¢þ
>C08000258
CP000361
Campylobacterota
Aliarcobacter butzleri RM4018 [CP000361]
1882129
1882205
+
Met
CAT
[Ensembl]
¡û
>WENV182577431
OJGE01013762
[OJGE] seawater metagenome; Sea water
380
304
-
Met
CAT
[ENA]
¢þ
>WENV183058332
OLHP01012095
[OLHP] seawater metagenome; Sea water
396
320
-
Met
CAT
[ENA]
¢þ
>WENV183515762
OMKS01091235
[OMKS] sediment metagenome; hot spring sediment
657
733
+
Met
CAT
[ENA]
¢þ
>WENV170001007
AGBJ01000404
[AGBJ] hypersaline lake metagenome; upper interface of the deep-sea hypersaline anoxic lake (DHAL) Thetis located South-East
2016
1940
-
Met
CAT
[ENA]
¢þ
>WENV170615153
FUWD012850229
[FUWD] metagenome; unknown
13138
13214
+
Met
CAT
[ENA]
¢þ
>WENV170640680
JFJP01023938
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
1522
1446
-
Met
CAT
[ENA]
¢þ
>WENV170657388
JTFO01138921
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
258
334
+
Met
CAT
[ENA]
¢þ
>WENV170658140
JTFP01058968
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
416
492
+
Met
CAT
[ENA]
¢þ
>WENV170674569
LBBO01000272
[LBBO] hydrothermal vent metagenome; microbial mat from marine hydrothermal vent chimney in a deep-sea hydrothermal vent field
61316
61392
+
Met
CAT
[ENA]
¢þ
>WENV170686004
LFRM01121424
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2630
2706
+
Met
CAT
[ENA]
¢þ
>WENV170716619
LSQX01005666
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
110
34
-
Met
CAT
[ENA]
¢þ
>W141451856
JFBL01000001
Campylobacterota
Sulfurospirillum arcachonense DSM 9755 [JFBL]
156655
156579
-
Met
CAT
[ENA]
¡û
>C181078327
CP023275
Campylobacterota
Sulfurospirillum diekertiae JPD-1 [CP023275]
908188
908264
+
Met
CAT
-
¡û
>C181225255
LT906455
Campylobacterota
Aliarcobacter butzleri NCTC 12481 [LT906455]
1882122
1882198
+
Met
CAT
-
¡û
>C191084449
CP032097
Campylobacterota
Arcobacter ellisii LMG 26155 [CP032097]
2215981
2215905
-
Met
CAT
-
¡û
>C191084556
CP032099
Campylobacterota
Aliarcobacter skirrowii CCUG 10374 [CP032099]
1483985
1483909
-
Met
CAT
-
¡û
>C191084607
CP032100
Campylobacterota
Arcobacter suis CECT 7833 [CP032100]
2109352
2109276
-
Met
CAT
-
¡û
>C191122833
CP034309
Campylobacterota
Aliarcobacter skirrowii A2S6 [CP034309]
1346217
1346141
-
Met
CAT
-
¡û
>C191147092
CP035926
Campylobacterota
Aliarcobacter thereius LMG 24486 [CP035926]
1293594
1293670
+
Met
CAT
-
¡û
>C191149073
CP036246
Campylobacterota
Arcobacter porcinus CCUG 56899 [CP036246]
1351570
1351646
+
Met
CAT
-
¡û
>C191178275
CP040507
Campylobacterota
Aliarcobacter butzleri JV22 [CP040507]
1835541
1835617
+
Met
CAT
-
¡û
>W141814431
JQGK01000003
Campylobacterota
Sulfurospirillum sp. SCADC [JQGK]
132958
133034
+
Met
CAT
[ENA]
¡û
>W09110111
ABUV01000012
Campylobacterota
Sulfurospirillum deleyianum DSM 6946 [ABUV]
2521
2445
-
Met
CAT
[ENA]
¡û
>C141005636
CP006615
Campylobacterota
Aliarcobacter butzleri 7h1h [CP006615]
1757155
1757231
+
Met
CAT
[Ensembl]
¡û
>W1910810891
MUXE01000024
Campylobacterota
Arcobacter caeni RW17-10 [MUXE]
21247
21323
+
Met
CAT
[ENA]
¡û
>W1910810923
MUXF01000014
Campylobacterota
Arcobacter lacus RW43-9 [MUXF]
83916
83992
+
Met
CAT
[ENA]
¡û
>W1911200241
NREO01000021
Campylobacterota
Arcobacter suis CECT7833 [NREO]
1918
1842
-
Met
CAT
[ENA]
¡û
>W1911200274
NREP01000004
Campylobacterota
Arcobacter venerupis CECT7836 [NREP]
3637
3713
+
Met
CAT
[ENA]
¡û
>W1911200298
NREP01000016
Campylobacterota
Arcobacter venerupis CECT7836 [NREP]
29595
29671
+
Met
CAT
[ENA]
¡û
>W1911424332
NXGC01000001
Campylobacterota
Aliarcobacter cryaerophilus LMG 29976 [NXGC]
530153
530077
-
Met
CAT
[ENA]
¡û
>W1911426161
NXIC01000006
Campylobacterota
Aliarcobacter skirrowii CCUG 10374 LMG 6621 [NXIC]
30745
30821
+
Met
CAT
[ENA]
¡û
>W1911426336
NXIG01000010
Campylobacterota
Arcobacter ellisii CECT 7837 [NXIG]
71270
71194
-
Met
CAT
[ENA]
¡û
>W1911426379
NXIH01000013
Campylobacterota
Arcobacter defluvii CECT 7697 [NXIH]
44772
44848
+
Met
CAT
[ENA]
¡û
>W1911426443
NXII01000025
Campylobacterota
Arcobacter cloacae CECT 7834 [NXII]
24810
24886
+
Met
CAT
[ENA]
¡û
>W1911426479
NXIJ01000025
Campylobacterota
Arcobacter aquimarinus CECT 8442 [NXIJ]
49224
49300
+
Met
CAT
[ENA]
¡û
>W1911576118
PDJT01000055
Campylobacterota
Aliarcobacter skirrowii F28 [PDJT]
24766
24690
-
Met
CAT
[ENA]
¡û
>W1911576421
PDJZ01000016
Campylobacterota
Arcobacter cloacae F26 [PDJZ]
2845
2769
-
Met
CAT
[ENA]
¡û
>W1911576728
PDKH01000006
Campylobacterota
Arcobacter sp. CECT 9299 [PDKH]
38832
38756
-
Met
CAT
[ENA]
¡û
>W1911746052
QVQX01000009
Campylobacterota
Aliarcobacter butzleri 17-1168 [QVQX]
99876
99952
+
Met
CAT
[ENA]
¡û
>W1911748935
QWFD01000007
Campylobacterota
Aliarcobacter skirrowii 17-1208-1 [QWFD]
39056
38980
-
Met
CAT
[ENA]
¡û
>W1911748977
QWFE01000007
Campylobacterota
Aliarcobacter skirrowii 17-1206-2 [QWFE]
39056
38980
-
Met
CAT
[ENA]
¡û
>W1911775187
QXMK01000012
Campylobacterota
Aliarcobacter butzleri 55 [QXMK]
493
417
-
Met
CAT
[ENA]
¡û
>W1911775375
QXNB01000014
Campylobacterota
Aliarcobacter butzleri 6V [QXNB]
77806
77882
+
Met
CAT
[ENA]
¡û
>W1810584091
QEYG01000003
Campylobacterota
Aliarcobacter skirrowii 17-1201-3 [QEYG]
34490
34414
-
Met
CAT
[ENA]
¡û
>W1810584157
QEYH01000007
Campylobacterota
Aliarcobacter skirrowii 17-1201-4 [QEYH]
39056
38980
-
Met
CAT
[ENA]
¡û
>W1810584200
QEYI01000008
Campylobacterota
Aliarcobacter skirrowii 17-1208-2 [QEYI]
33215
33139
-
Met
CAT
[ENA]
¡û
>C151018375
CP007201
Campylobacterota
Sulfurospirillum multivorans DSM 12446 [CP007201]
972151
972227
+
Met
CAT
[Ensembl]
¡û
>C151092541
CP012196
Campylobacterota
Campylobacter gracilis ATCC 33236 [CP012196]
67004
67080
+
Met
CAT
-
¡û
>ENV09001692
ACQI01002765
Hydrothermal vent metagenome LCHCB.C1
859
783
-
Met
CAT
[ENA]
¡û
>W1510014754
BBQF01000001
Campylobacterota
Sulfurospirillum arsenophilum NBRC 109478 [BBQF]
864173
864249
+
Met
CAT
[ENA]
¡û
>C10111315
CP001816
Campylobacterota
Sulfurospirillum deleyianum DSM 6946 [CP001816]
759224
759300
+
Met
CAT
[Ensembl]
¡û
>C11100379
AP012047
Campylobacterota
Aliarcobacter butzleri ED-1 [AP012047]
1759953
1760029
+
Met
CAT
[Ensembl]
¡û
>C11101069
AP012048
Campylobacterota
Arcobacter sp. L [AP012048]
2385031
2384955
-
Met
CAT
[Ensembl]
¡û
>W1510763025
JAIW01000049
Campylobacterota
Aliarcobacter butzleri L355 [JAIW]
94
170
+
Met
CAT
[ENA]
¡û
>W11143295
AEPT01000030
Campylobacterota
Aliarcobacter butzleri JV22 [AEPT]
1727
1803
+
Met
CAT
[ENA]
¡û
>W11167764
AFNL01000023
Campylobacterota
Aliarcobacter butzleri 7h1h [AFNL]
71029
71105
+
Met
CAT
[ENA]
¡û
>C121011165
CP003333
Campylobacterota
Sulfurospirillum barnesii SES-3 [CP003333]
814125
814201
+
Met
CAT
[Ensembl]
¡û
>C161001359
AP014723
Campylobacterota
Sulfurospirillum sp. UCH001 [AP014723]
871653
871729
+
Met
CAT
-
¡û
>W1610584470
LCSK01000007
Campylobacterota
Arcobacter porcinus [LCSK]
92428
92504
+
Met
CAT
[ENA]
¡û
>W1610584515
LCSL01000007
Campylobacterota
Arcobacter porcinus [LCSL]
70822
70898
+
Met
CAT
[ENA]
¡û
>W1610584922
LCUH01000006
Campylobacterota
Aliarcobacter thereius [LCUH]
81359
81435
+
Met
CAT
[ENA]
¡û
>W1610584964
LCUI01000005
Campylobacterota
Arcobacter porcinus [LCUI]
69933
69857
-
Met
CAT
[ENA]
¡û
>W1610585015
LCUJ01000008
Campylobacterota
Aliarcobacter thereius [LCUJ]
23012
22936
-
Met
CAT
[ENA]
¡û
>W1610585056
LCUK01000005
Campylobacterota
Aliarcobacter thereius [LCUK]
132414
132490
+
Met
CAT
[ENA]
¡û
>W1610586380
LDIR01000004
Campylobacterota
Arcobacter porcinus [LDIR]
71886
71810
-
Met
CAT
[ENA]
¡û
>W1610586428
LDIS01000004
Campylobacterota
Aliarcobacter thereius [LDIS]
177935
178011
+
Met
CAT
[ENA]
¡û
>W1610699364
LLKQ01000001
Campylobacterota
Aliarcobacter thereius LMG 24486 [LLKQ]
1067978
1067902
-
Met
CAT
[ENA]
¡û
>WENV078082
AAFY01018359
Fossil microbial community from Whale Fall (Santa Cruz Basin)
360
436
+
Met
CAT
[ENA]
>W1710703687
LCSK01000007
Campylobacterota
Arcobacter porcinus [LCSK]
92428
92504
+
Met
CAT
[ENA]
¡û
>W1710703732
LCSL01000007
Campylobacterota
Arcobacter porcinus [LCSL]
70822
70898
+
Met
CAT
[ENA]
¡û
>W1710704113
LCUH01000006
Campylobacterota
Aliarcobacter thereius [LCUH]
81359
81435
+
Met
CAT
[ENA]
¡û
>W1710704155
LCUI01000005
Campylobacterota
Arcobacter porcinus [LCUI]
69933
69857
-
Met
CAT
[ENA]
¡û
>W1710704206
LCUJ01000008
Campylobacterota
Aliarcobacter thereius [LCUJ]
23012
22936
-
Met
CAT
[ENA]
¡û
>W1710704247
LCUK01000005
Campylobacterota
Aliarcobacter thereius [LCUK]
132414
132490
+
Met
CAT
[ENA]
¡û
>W1710705510
LDIR01000004
Campylobacterota
Arcobacter porcinus [LDIR]
71886
71810
-
Met
CAT
[ENA]
¡û
>W1710705558
LDIS01000004
Campylobacterota
Aliarcobacter thereius [LDIS]
177935
178011
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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