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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146165 (48 seq.)
>W1711420824
MHXP01000121
Planctomycetota
Planctomycetes bacterium GWA2_39_15 [MHXP]
1817
1894
+
Pro
TGG
[ENA]
¡û
>W1711420897
MHXS01000016
Planctomycetota
Planctomycetes bacterium GWB2_41_19 [MHXS]
2088
2165
+
Pro
TGG
[ENA]
¡û
>W1711420992
MHXW01000063
Planctomycetota
Planctomycetes bacterium GWE2_41_14 [MHXW]
2414
2337
-
Pro
TGG
[ENA]
¡û
>W1711421523
MHZD01000098
Planctomycetota
Planctomycetes bacterium RIFOXYC2_FULL_41_27 [MHZD]
6642
6719
+
Pro
TGG
[ENA]
¡û
>W1711475529
MJUW02000101
Planctomycetota
Candidatus Brocadia sapporoensis sp. 40 [MJUW]
10275
10352
+
Pro
TGG
[ENA]
¡û
>WENV180094498
MTBK01011080
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
96
19
-
Pro
TGG
[ENA]
¡û
>WENV180096826
MTBK01150966
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
406
483
+
Pro
TGG
[ENA]
¡û
>WENV170561017
CZCA01002020
[CZCA] anaerobic digester metagenome; anaerobic digester
17098
17021
-
Pro
TGG
[ENA]
¡û
>WENV170561346
CZCA01006690
[CZCA] anaerobic digester metagenome; anaerobic digester
2133
2210
+
Pro
TGG
[ENA]
¡û
>WENV170561358
CZCA01007040
[CZCA] anaerobic digester metagenome; anaerobic digester
5339
5416
+
Pro
TGG
[ENA]
¡û
>WENV170562234
CZCB01001523
[CZCB] anaerobic digester metagenome; anaerobic digester
1037
1114
+
Pro
TGG
[ENA]
¡û
>WENV170562410
CZCB01002590
[CZCB] anaerobic digester metagenome; anaerobic digester
73770
73847
+
Pro
TGG
[ENA]
¡û
>WENV170685046
LFRM01070819
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
11204
11281
+
Pro
TGG
[ENA]
¡û
>WENV170687829
LFRM01212840
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1838
1761
-
Pro
TGG
[ENA]
¡û
>WENV170689801
LFRM01311955
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
5195
5118
-
Pro
TGG
[ENA]
¡û
>WENV170720052
LSQX01138956
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
13719
13796
+
Pro
TGG
[ENA]
¡û
>WENV170721065
LSQX01178064
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
11341
11418
+
Pro
TGG
[ENA]
¡û
>WENV170723903
LSQX01284901
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
8767
8690
-
Pro
TGG
[ENA]
¡û
>WENV170724906
LSQX01323110
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
567
644
+
Pro
TGG
[ENA]
¡û
>WENV170725994
LSQX01364166
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
26092
26015
-
Pro
TGG
[ENA]
¡û
>WENV170967548
MTKW01002017
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
3979
3902
-
Pro
TGG
[ENA]
¡û
>WENV170967605
MTKW01002364
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
50714
50791
+
Pro
TGG
[ENA]
¡û
>WENV170967901
MTKW01004275
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
8748
8671
-
Pro
TGG
[ENA]
¡û
>WENV170968774
MTKW01014219
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
440
517
+
Pro
TGG
[ENA]
¡û
>WENV170970269
MTKW01059379
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
219
142
-
Pro
TGG
[ENA]
¡û
>C181227268
LT934425
Planctomycetota
Candidatus Kuenenia stuttgartiensis [LT934425]
751740
751663
-
Pro
TGG
-
¡û
>W1910743311
MHYP01000152
Planctomycetota
Planctomycetes bacterium RIFCSPHIGHO2_02_FULL_38_41 [MHYP]
2122
2199
+
Pro
TGG
[ENA]
¡û
>W1910743552
MHYY01000073
Planctomycetota
Planctomycetes bacterium RIFCSPLOWO2_12_38_17 [MHYY]
8
85
+
Pro
TGG
[ENA]
¡û
>W1910743580
MHYZ01000092
Planctomycetota
Planctomycetes bacterium RIFCSPLOWO2_12_FULL_39_13 [MHYZ]
4443
4366
-
Pro
TGG
[ENA]
¡û
>W1911498190
OCTL01000098
Planctomycetota
Candidatus Kuenenia stuttgartiensis [OCTL]
103205
103282
+
Pro
TGG
[ENA]
¡û
>W1911498206
OCTL01000120
Planctomycetota
Candidatus Kuenenia stuttgartiensis [OCTL]
10234
10311
+
Pro
TGG
[ENA]
¡û
>W2011159094
OCTL01000098
Planctomycetota
Candidatus Kuenenia stuttgartiensis [OCTL]
103205
103282
+
Pro
TGG
[ENA]
¡û
>W2011159110
OCTL01000120
Planctomycetota
Candidatus Kuenenia stuttgartiensis [OCTL]
10234
10311
+
Pro
TGG
[ENA]
¡û
>W2011640025
SMSM01000001
Planctomycetota
Candidatus Brocadiaceae bacterium B188 [SMSM]
2118355
2118432
+
Pro
TGG
[ENA]
¡û
>C201220915
CP049055
Unclassified
Candidatus Kuenenia stuttgartiensis CSTR1 [CP049055]
1741655
1741732
+
Pro
TGG
-
¡û
>C211002130
AP021856
Unclassified
Candidatus Brocadia pituitae [AP021856]
1063367
1063444
+
Pro
TGG
-
¡û
>C211096097
CP054188
Planctomycetota
Planctomycetia bacterium [CP054188]
2671918
2671841
-
Pro
TGG
-
¡û
>C231293320
CP091278
Unclassified
Candidatus Jettenia sp. [CP091278]
1143601
1143678
+
Pro
TGG
-
¡û
>C231293367
CP091279
Unclassified
Candidatus Brocadia sp. [CP091279]
674266
674343
+
Pro
TGG
-
¡û
>W1511576996
LAQJ01000136
Planctomycetota
Candidatus Brocadia fulgida [LAQJ]
22019
22096
+
Pro
TGG
[ENA]
¡û
>W121124545
BAFH01000004
Planctomycetota
Candidatus Jettenia caeni KSU-1 [BAFH]
1058396
1058473
+
Pro
TGG
[ENA]
¡û
>W1610040594
BAFN01000001
Planctomycetota
Candidatus Brocadia sinica sinica JPN1 [BAFN]
3830497
3830420
-
Pro
TGG
[ENA]
¡û
>W1610574501
JZEK01000009
Planctomycetota
Candidatus Brocadia sinica [JZEK]
3549
3472
-
Pro
TGG
[ENA]
¡û
>W1610607027
LFTN01000119
Bacillota
Clostridiales bacterium DTU087 [LFTN]
1838
1761
-
Pro
TGG
[ENA]
¡û
>ENV003059
CT573071
Environmental sample from ENV division of INSDC
1138738
1138815
+
Pro
TGG
[ENA]
>W1710037822
BAFN01000001
Planctomycetota
Candidatus Brocadia sinica sinica JPN1 [BAFN]
3830497
3830420
-
Pro
TGG
[ENA]
¡û
>W1710687280
JZEK01000009
Planctomycetota
Candidatus Brocadia sinica [JZEK]
3549
3472
-
Pro
TGG
[ENA]
¡û
>W1710728314
LFTN01000119
Bacillota
Clostridiales bacterium DTU087 [LFTN]
1838
1761
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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