This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147570 (81 seq.)
>A171000114
AP011952
Euryarchaeota
Methanothermobacter sp. CaT2 [AP011952]
1143277
1143203
-
Met
CAT
-
¡û
>A171000915
CP001710
Euryarchaeota
Methanothermobacter marburgensis str. Marburg [CP001710]
1519486
1519412
-
Met
CAT
-
¡û
>A171002049
CP002551
Euryarchaeota
Methanobacterium lacus AL-21 [CP002551]
299932
299857
-
Met
CAT
-
¡û
>A171002247
CP002772
Euryarchaeota
Methanobacterium paludis SWAN1 [CP002772]
2209627
2209702
+
Met
CAT
-
¡û
>A171004017
CP006933
Euryarchaeota
Methanobacterium formicicum BRM9 [CP006933]
339444
339371
-
Met
CAT
-
¡û
>A171007313
HG425166
Euryarchaeota
Methanobacterium sp. MB1 [HG425166]
1716015
1716088
+
Met
CAT
-
¡û
>A171007343
LN515531
Euryarchaeota
Methanobacterium formicicum [LN515531]
964784
964857
+
Met
CAT
-
¡û
>A171007395
LN734822
Euryarchaeota
Methanobacterium formicicum [LN734822]
2096552
2096625
+
Met
CAT
-
¡û
>A171007663
LT607756
Euryarchaeota
Methanobacterium congolense [LT607756]
2131056
2131131
+
Met
CAT
-
¡û
>A171007719
LT608329
Euryarchaeota
Methanothermobacter wolfeii [LT608329]
1530178
1530104
-
Met
CAT
-
¡û
>WENV180036854
FVAA010385380
[FVAA] soil metagenome; Soil
108
32
-
Ile2
CAT
[ENA]
¢þ
>WENV180240512
OBDD01004739
[OBDD] human gut metagenome; human gut
249
324
+
Met
CAT
[ENA]
¢þ
>WENV180246466
OBDP01000160
[OBDP] human gut metagenome; human gut
10542
10467
-
Ile2
CAT
[ENA]
¢þ
>WENV180335714
OBLG01000200
[OBLG] human gut metagenome; human gut
14782
14857
+
Met
CAT
[ENA]
¢þ
>WENV180542461
OCHS01176247
[OCHS] human gut metagenome; human gut
130
205
+
Met
CAT
[ENA]
¢þ
>WENV180545347
OCIT01002201
[OCIT] human gut metagenome; human gut
214
289
+
Ile2
CAT
[ENA]
¢þ
>WENV180578006
OCMB01004922
[OCMB] human gut metagenome; human gut
800
725
-
Met
CAT
[ENA]
¢þ
>WENV180657039
OCVV010623736
[OCVV] gut metagenome; gut
481
406
-
Ile2
CAT
[ENA]
¢þ
>WENV180657043
OCVV010623736
[OCVV] gut metagenome; gut
481
406
-
Ile2
CAT
[ENA]
¢þ
>WENV180661006
OCVV010980698
[OCVV] gut metagenome; gut
4390
4465
+
Ile2
CAT
[ENA]
¢þ
>WENV180661011
OCVV010980698
[OCVV] gut metagenome; gut
4390
4465
+
Ile2
CAT
[ENA]
¢þ
>WENV180675927
OCVV011360788
[OCVV] gut metagenome; gut
484
409
-
Ile2
CAT
[ENA]
¢þ
>WENV180675931
OCVV011360788
[OCVV] gut metagenome; gut
484
409
-
Ile2
CAT
[ENA]
¢þ
>WENV181230056
OFEK01000230
[OFEK] activated sludge metagenome; Anaerobic digester
75427
75500
+
Ile2
CAT
[ENA]
¢þ
>WENV181230059
OFEK01000232
[OFEK] activated sludge metagenome; Anaerobic digester
73265
73191
-
Ile2
CAT
[ENA]
¢þ
>WENV181336430
OFMD01000667
[OFMD] human gut metagenome; human gut
12732
12807
+
Met
CAT
[ENA]
¢þ
>WENV181416916
OGCL01179986
[OGCL] hot springs metagenome; Hot spring water
482
408
-
Ile2
CAT
[ENA]
¢þ
>WENV181903219
OGXX01000628
[OGXX] human gut metagenome; faeces
18177
18252
+
Met
CAT
[ENA]
¢þ
>WENV182127119
OHJU01004921
[OHJU] human gut metagenome; feces
1542
1617
+
Met
CAT
[ENA]
¢þ
>WENV182180424
OHNO01000915
[OHNO] human gut metagenome; feces
256
331
+
Met
CAT
[ENA]
¢þ
>WENV182235324
OHRT01000006
[OHRT] human gut metagenome; feces
13563
13638
+
Met
CAT
[ENA]
¢þ
>WENV182274026
OHUJ01024315
[OHUJ] human gut metagenome; feces
718
793
+
Met
CAT
[ENA]
¢þ
>WENV182290339
OHVX01018292
[OHVX] human gut metagenome; feces
597
672
+
Met
CAT
[ENA]
¢þ
>WENV182353773
OIBL01037693
[OIBL] human gut metagenome; feces
468
543
+
Met
CAT
[ENA]
¢þ
>WENV182397788
OIEN01000033
[OIEN] human gut metagenome; human gut
12730
12805
+
Met
CAT
[ENA]
¢þ
>WENV182662557
OJMO01000001
[OJMO] human gut metagenome; feces
118567
118642
+
Met
CAT
[ENA]
¢þ
>WENV182899657
OKST01000470
[OKST] human gut metagenome; feces
17189
17264
+
Met
CAT
[ENA]
¢þ
>WENV183133110
OLOB01024174
[OLOB] human gut metagenome; faeces
1393
1468
+
Ile2
CAT
[ENA]
¢þ
>WENV183172468
OLPC01013106
[OLPC] human gut metagenome; faeces
1065
990
-
Met
CAT
[ENA]
¢þ
>WENV183293062
OLSK01000009
[OLSK] human gut metagenome; faeces
12777
12852
+
Met
CAT
[ENA]
¢þ
>WENV183296270
OLSL01025127
[OLSL] human gut metagenome; faeces
103
28
-
Ile2
CAT
[ENA]
¢þ
>WENV183308003
OLTU01004675
[OLTU] human gut metagenome; faeces
549
474
-
Met
CAT
[ENA]
¢þ
>WENV183382506
OLYL01002045
[OLYL] human gut metagenome; feces
5522
5597
+
Met
CAT
[ENA]
¢þ
>WENV183507783
OMGY01069977
[OMGY] human gut metagenome; human gut
20
95
+
Ile2
CAT
[ENA]
¢þ
>WENV183519564
OMNT01001120
[OMNT] human gut metagenome; faeces
13211
13136
-
Met
CAT
[ENA]
¢þ
>WENV183774928
PPYF01064685
[PPYF] human gut metagenome; stool from patient with Crohn's disease
17800
17875
+
Met
CAT
[ENA]
¢þ
>WENV183786497
PPYF01304711
[PPYF] human gut metagenome; stool from patient with Crohn's disease
10362
10287
-
Met
CAT
[ENA]
¢þ
>WENV170021461
BBPF01012944
[BBPF] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
2056
1980
-
Met
CAT
[ENA]
¢þ
>WENV170670006
LAHS01015037
[LAHS] activated sludge metagenome; sample C-1; Sludge from hydrolytic chamber (first chamber) of Anaerobic Baffled Reactor over
294
218
-
Met
CAT
[ENA]
¢þ
>WENV170671061
LAHU01010551
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
3935
3861
-
Met
CAT
[ENA]
¢þ
>WENV170675828
LDZQ01000830
[LDZQ] terrestrial metagenome; oil reservoir sample I2
1414
1340
-
Met
CAT
[ENA]
¢þ
>WENV170676705
LDZS01002002
[LDZS] terrestrial metagenome; oil reservoir sample K3
2250
2176
-
Met
CAT
[ENA]
¢þ
>WENV170677319
LDZT01004936
[LDZT] terrestrial metagenome; oil reservoir sample SB1
4416
4489
+
Met
CAT
[ENA]
¢þ
>WENV170686156
LFRM01129414
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
851
777
-
Met
CAT
[ENA]
¢þ
>At1558
CP000102
Euryarchaeota
Methanosphaera stadtmanae DSM 3091 [CP000102]
337051
337124
+
Met
CAT
[Ensembl]
¡û
>WENV170972556
MTKX01034777
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
635
562
-
Met
CAT
[ENA]
¢þ
>WENV170976347
MTKZ01006900
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2218
2291
+
Met
CAT
[ENA]
¢þ
>W1910574933
JQJK01000016
Euryarchaeota
Methanobacterium veterum MK4 [JQJK]
172612
172686
+
Met
CAT
[ENA]
¡û
>W1910574973
JQKN01000019
Euryarchaeota
Methanobacterium arcticum M2 [JQKN]
21360
21286
-
Met
CAT
[ENA]
¡û
>W1910575095
JQLY01000001
Euryarchaeota
Methanobacterium sp. SMA-27 [JQLY]
2145177
2145255
+
Met
CAT
[ENA]
¡û
>W1910576023
JRWK01000005
Euryarchaeota
Methanosphaera sp. WGK6 [JRWK]
64265
64190
-
Met
CAT
[ENA]
¡û
>W1910583614
JXMW01000001
Euryarchaeota
Methanobrevibacter arboriphilus JCM 13429 = DSM 1125 DH1 [JXMW]
202963
202888
-
Met
CAT
[ENA]
¡û
>W1910635129
LMVM01000012
Euryarchaeota
Methanobacterium bryantii M.o.H. [LMVM]
448262
448336
+
Met
CAT
[ENA]
¡û
>W1910635184
LMVN01000029
Euryarchaeota
Methanosphaera cuniculi 1R-7 [LMVN]
56661
56586
-
Met
CAT
[ENA]
¡û
>W1910646607
LWMS01000002
Euryarchaeota
Methanosphaera cuniculi DSM 4103 [LWMS]
48480
48405
-
Met
CAT
[ENA]
¡û
>W1910655466
LZPM01000042
Euryarchaeota
Methanobacterium sp. A39 [LZPM]
19538
19612
+
Met
CAT
[ENA]
¡û
>W1910656114
MAIF01000012
Euryarchaeota
Methanosphaera sp. A6 [MAIF]
6869
6794
-
Met
CAT
[ENA]
¡û
>W1910899140
NGJK01000015
Euryarchaeota
Methanosphaera stadtmanae PA5 [NGJK]
45576
45651
+
Met
CAT
[ENA]
¡û
>W1910938897
NIZT01000038
Euryarchaeota
Candidatus Methanobinarius endosymbioticus NOE [NIZT]
32594
32519
-
Met
CAT
[ENA]
¡û
>W1911722781
QREL01000001
Euryarchaeota
Methanothermobacter defluvii DSM 7466 [QREL]
94296
94370
+
Met
CAT
[ENA]
¡û
>W1610006213
AMGN01000001
Euryarchaeota
Methanobacterium sp. Maddingley MBC34 [AMGN]
13844
13771
-
Met
CAT
[ENA]
¡û
>W1610011021
AMPO01000008
Euryarchaeota
Methanobacterium formicicum DSM 3637 [AMPO]
50264
50191
-
Met
CAT
[ENA]
¡û
>W1610045146
BBBD01000411
Euryarchaeota
Methanobrevibacter arboriphilus JCM 9315 [BBBD]
1018
1093
+
Met
CAT
[ENA]
¡û
>W1610049151
BBES01000007
Euryarchaeota
Methanobacterium formicicum JCM 10132 [BBES]
95862
95935
+
Met
CAT
[ENA]
¡û
>W1610049180
BBET01000007
Euryarchaeota
Methanobrevibacter arboriphilus JCM 13429 = DSM 1125 [BBET]
8549
8474
-
Met
CAT
[ENA]
¡û
>W1610083212
CBVX010000001
Euryarchaeota
Methanobrevibacter arboriphilus ANOR1 [CBVX]
496866
496791
-
Met
CAT
[ENA]
¡û
>W1610612485
LGEU01000045
Euryarchaeota
Methanobacteriaceae archaeon 41_258 [LGEU]
6454
6378
-
Met
CAT
[ENA]
¡û
>W1610613873
LGGL01000043
Euryarchaeota
Methanobacterium sp. 42_16 [LGGL]
4416
4489
+
Met
CAT
[ENA]
¡û
>W1610990686
LWMT01000284
Euryarchaeota
Methanobrevibacter filiformis DSM 11501 [LWMT]
5218
5143
-
Met
CAT
[ENA]
¡û
>W1610990727
LWMV01000032
Euryarchaeota
Methanobrevibacter curvatus DSM 11111 [LWMV]
7285
7360
+
Met
CAT
[ENA]
¡û
>W1610990762
LWMW01000087
Euryarchaeota
Methanobrevibacter cuticularis DSM 11139 [LWMW]
23092
23167
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK