This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148845 (52 seq.)
>W1710852987
LLWF02000008
Alphaproteobacteria
Roseomonas mucosa [LLWF]
42625
42701
+
Pro
GGG
[ENA]
¡û
>W1711188834
LWQU01000137
Alphaproteobacteria
Magnetospirillum moscoviense [LWQU]
33689
33765
+
Pro
GGG
[ENA]
¡û
>W1711503715
MKTV01000097
Alphaproteobacteria
Rhodospirillales bacterium 69-11 [MKTV]
8664
8740
+
Pro
GGG
[ENA]
¡û
>W1711505320
MKVK01000011
Alphaproteobacteria
Magnetospirillum sp. 64-120 [MKVK]
224681
224757
+
Pro
GGG
[ENA]
¡û
>W1711506169
MKWE01000007
Alphaproteobacteria
Rhodospirillales bacterium 70-18 [MKWE]
105305
105229
-
Pro
GGG
[ENA]
¡û
>C171039573
CP015583
Alphaproteobacteria
Roseomonas gilardii U14-5 [CP015583, CP015584]
1945267
1945191
-
Pro
GGG
-
¡û
>W131043751
AMPS01000048
Alphaproteobacteria
Acidocella sp. MX-AZ02 [AMPS]
5509
5585
+
Pro
GGG
[ENA]
¡û
>W131176821
ARKI01000051
Alphaproteobacteria
Elioraea tepidiphila DSM 17972 [ARKI]
5238
5314
+
Pro
GGG
[ENA]
¡û
>W131225097
AUDH01000018
Alphaproteobacteria
Rubritepida flocculans DSM 14296 [AUDH]
49196
49120
-
Pro
GGG
[ENA]
¡û
>C000520
CP000697
Alphaproteobacteria
Acidiphilium cryptum JF-5 [CP000697]
308536
308460
-
Pro
GGG
[Ensembl]
¡û
>WENV180015625
FQKF011032910
[FQKF] soil metagenome; Soil
2
75
+
Pro
GGG
[ENA]
¢þ
>WENV180097527
MTBK01194060
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
545
469
-
Pro
GGG
[ENA]
¢þ
>WENV181169928
OEIV010015145
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1538
1462
-
Pro
GGG
[ENA]
¢þ
>WENV181185090
OELB01000994
[OELB] metagenome; 1998
1735
1659
-
Pro
GGG
[ENA]
¢þ
>WENV181223669
OFDC01064669
[OFDC] hot springs metagenome; Water
573
497
-
Pro
GGG
[ENA]
¢þ
>WENV181416829
OGCL01158832
[OGCL] hot springs metagenome; Hot spring water
164
88
-
Pro
GGG
[ENA]
¢þ
>W141276654
JADY01000036
Alphaproteobacteria
Roseomonas gilardii subsp. rosea ATCC BAA-691 [JADY]
5659
5735
+
Pro
GGG
[ENA]
¡û
>WENV183693284
ORMF012055382
[ORMF] groundwater metagenome; groundwater
2007
1931
-
Pro
GGG
[ENA]
¢þ
>WENV170003210
AGTN01260743
[AGTN] bioreactor metagenome; poplar biomass
167
243
+
Pro
GGG
[ENA]
¢þ
>WENV170004100
AGTN01559991
[AGTN] bioreactor metagenome; poplar biomass
4665
4589
-
Pro
GGG
[ENA]
¢þ
>WENV170018583
BBPD01000042
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
4898
4974
+
Pro
GGG
[ENA]
¢þ
>WENV170019074
BBPD01003633
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
717
641
-
Pro
GGG
[ENA]
¢þ
>WENV170020129
BBPE01003229
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
58
134
+
Pro
GGG
[ENA]
¢þ
>WENV170020176
BBPE01003752
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
3189
3265
+
Pro
GGG
[ENA]
¢þ
>WENV170709659
LNFM01000568
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
34714
34638
-
Pro
GGG
[ENA]
¢þ
>WENV170710272
LNFM01001423
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
10161
10237
+
Pro
GGG
[ENA]
¢þ
>W141462254
JFHO01000062
Alphaproteobacteria
Acidiphilium sp. JA12-A1 [JFHO]
9514
9590
+
Pro
GGG
[ENA]
¡û
>C181102014
CP024588
Alphaproteobacteria
Roseomonas sp. FDAARGOS_362 [CP024588]
841351
841427
+
Pro
GGG
-
¡û
>C181155066
CP027526
Alphaproteobacteria
Magnetospirillum gryphiswaldense MSR-1 [CP027526]
1091637
1091713
+
Pro
GGG
-
¡û
>C181155116
CP027527
Alphaproteobacteria
Magnetospirillum gryphiswaldense R3/S1 [CP027527]
1091637
1091713
+
Pro
GGG
-
¡û
>W141558710
JHWD01000003
Alphaproteobacteria
Roseomonas mucosa ATCC BAA-692 [JHWD]
258006
257930
-
Pro
GGG
[ENA]
¡û
>W09105102
AAOO01000001
Alphaproteobacteria
Acidiphilium cryptum JF-5 [AAOO]
19079
19155
+
Pro
GGG
[ENA]
¡û
>W141561177
JHYG01000001
Alphaproteobacteria
Acidocella facilis ATCC 35904 [JHYG]
147591
147667
+
Pro
GGG
[ENA]
¡û
>W141731632
JNJH01000010
Alphaproteobacteria
Acidiphilium angustum ATCC 35903 [JNJH]
17008
17084
+
Pro
GGG
[ENA]
¡û
>W1911705924
QORV01000035
Alphaproteobacteria
Rhodospirillaceae bacterium SYSU D60006 [QORV]
59067
59143
+
Pro
GGG
[ENA]
¡û
>W1911706015
QORW01000013
Alphaproteobacteria
Dongia deserti SYSU D60009 [QORW]
91720
91644
-
Pro
GGG
[ENA]
¡û
>W1911768597
QXGS01000010
Alphaproteobacteria
Pseudoroseomonas vastitatis CPCC 101021 [QXGS]
77961
77885
-
Pro
GGG
[ENA]
¡û
>C151101077
HG794546
Alphaproteobacteria
Magnetospirillum gryphiswaldense MSR-1 v2 [HG794546]
1201500
1201424
-
Pro
GGG
[Ensembl]
¡û
>W10119157
ADVL01000354
Alphaproteobacteria
Pseudoroseomonas cervicalis ATCC 49957 [ADVL]
2086
2010
-
Pro
GGG
[ENA]
¡û
>C11100979
AP012035
Alphaproteobacteria
Acidiphilium multivorum AIU301 [AP012035]
341001
340925
-
Pro
GGG
[Ensembl]
¡û
>W11125377
ADVL01000354
Alphaproteobacteria
Pseudoroseomonas cervicalis ATCC 49957 [ADVL]
2086
2010
-
Pro
GGG
[ENA]
¡û
>W11170639
AFPR01000239
Alphaproteobacteria
Acidiphilium sp. PM [AFPR]
284
360
+
Pro
GGG
[ENA]
¡û
>W121113840
ALOX01000017
Alphaproteobacteria
Roseomonas sp. B5 [ALOX]
1272
1196
-
Pro
GGG
[ENA]
¡û
>W1610040944
BANA01000001
Alphaproteobacteria
Acidiphilium multivorum AIU301 [BANA]
292
368
+
Pro
GGG
[ENA]
¡û
>W1610041030
BANC01000005
Alphaproteobacteria
Acidocella aminolytica 101 = DSM 11237 [BANC]
55203
55279
+
Pro
GGG
[ENA]
¡û
>W1610990953
LWQU01000137
Alphaproteobacteria
Magnetospirillum moscoviense [LWQU]
33689
33765
+
Pro
GGG
[ENA]
¡û
>W1710038142
BANA01000001
Alphaproteobacteria
Acidiphilium multivorum AIU301 [BANA]
292
368
+
Pro
GGG
[ENA]
¡û
>W1710038228
BANC01000005
Alphaproteobacteria
Acidocella aminolytica 101 = DSM 11237 [BANC]
55203
55279
+
Pro
GGG
[ENA]
¡û
>W1710084282
BDLP01000132
Alphaproteobacteria
Roseomonas sp. TAS13 [BDLP]
2999
3075
+
Pro
GGG
[ENA]
¡û
>W1710584181
FQVJ01000003
Alphaproteobacteria
Acidocella aminolytica 101 = DSM 11237 [FQVJ]
55480
55556
+
Pro
GGG
[ENA]
¡û
>W1710588286
FQZF01000012
Alphaproteobacteria
Roseomonas rosea [FQZF]
53250
53174
-
Pro
GGG
[ENA]
¡û
>W1710597381
FTNE01000003
Alphaproteobacteria
Acidiphilium rubrum [FTNE]
17003
17079
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK