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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.150957 (34 seq.)
>W1711078537
LSMZ01000024
Bacillota
Clostridium sp. link-BC1 [LSMZ]
93628
93552
-
Val
GAC
[ENA]
¡û
>W1711222542
LXSB01000001
Bacillota
Clostridium sp. Bc-iso-3 [LXSB]
4209691
4209615
-
Val
GAC
[ENA]
¡û
>C007140
CP000568
Bacillota
Acetivibrio thermocellus ATCC 27405 [CP000568]
3750838
3750762
-
Val
GAC
[Ensembl]
¡û
>WENV180095088
MTBK01048243
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
86
162
+
Val
GAC
[ENA]
¢þ
>W08011373
ABVG01000001
Bacillota
Acetivibrio thermocellus DSM 4150 [ABVG]
15743
15670
-
Val
GAC
[ENA]
¡û
>W141251509
CBQO010000136
Bacillota
Acetivibrio thermocellus BC1 [CBQO]
42825
42749
-
Val
GAC
[ENA]
¡û
>WENV170563954
CZCB01038669
[CZCB] anaerobic digester metagenome; anaerobic digester
1750
1674
-
Val
GAC
[ENA]
¢þ
>WENV170564077
CZCB01046526
[CZCB] anaerobic digester metagenome; anaerobic digester
701
625
-
Val
GAC
[ENA]
¢þ
>WENV170640888
JFJP01029818
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
10170
10246
+
Val
GAC
[ENA]
¢þ
>WENV170684618
LFRM01049172
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
232925
233001
+
Val
GAC
[ENA]
¢þ
>WENV170686722
LFRM01160451
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
4921
4997
+
Val
GAC
[ENA]
¢þ
>WENV170690126
LFRM01326739
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
925
849
-
Val
GAC
[ENA]
¢þ
>WENV170718945
LSQX01096072
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
12787
12711
-
Val
GAC
[ENA]
¢þ
>WENV170719478
LSQX01116075
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2938
3014
+
Val
GAC
[ENA]
¢þ
>WENV170725600
LSQX01348956
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
14743
14819
+
Val
GAC
[ENA]
¢þ
>WENV170726942
LSQX01399530
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
5079
5155
+
Val
GAC
[ENA]
¢þ
>W09100462
AABG04000034
Bacillota
Acetivibrio thermocellus ATCC 27405 [AABG]
24740
24664
-
Val
GAC
[ENA]
¡û
>WENV170968272
MTKW01007590
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
7735
7811
+
Val
GAC
[ENA]
¢þ
>W09135644
ACVX01000004
Bacillota
Acetivibrio thermocellus DSM 2360 [ACVX]
47751
47827
+
Val
GAC
[ENA]
¡û
>C181114062
CP025197
Bacillota
Acetivibrio saccincola GGR1 [CP025197]
1223406
1223330
-
Val
GAC
-
¡û
>W1910884614
NEMB01000003
Bacillota
Acetivibrio saccincola A7 [NEMB]
2202678
2202602
-
Val
GAC
[ENA]
¡û
>W1911496642
OCMV01000002
Bacillota
Acetivibrio thermocellus LQRI [OCMV]
3193348
3193424
+
Val
GAC
[ENA]
¡û
>W1911572354
PDBW01000001
Bacillota
Acetivibrio thermocellus AD2 [PDBW]
836225
836149
-
Val
GAC
[ENA]
¡û
>C11106506
CP002416
Bacillota
Acetivibrio thermocellus DSM 1313 [CP002416]
833808
833732
-
Val
GAC
[Ensembl]
¡û
>C161060815
CP013828
Bacillota
Acetivibrio thermocellus AD2 [CP013828]
836225
836149
-
Val
GAC
-
¡û
>C161097567
CP016502
Bacillota
Acetivibrio thermocellus DSM 2360 LQRI [CP016502]
836695
836619
-
Val
GAC
-
¡û
>W121061338
AJGS01000098
Bacillota
Acetivibrio thermocellus AD2 [AJGS]
47776
47852
+
Val
GAC
[ENA]
¡û
>W121061349
AJGT01000012
Bacillota
Acetivibrio thermocellus YS [AJGT]
79085
79009
-
Val
GAC
[ENA]
¡û
>W1610605331
LFRV01000053
Bacillota
Clostridiales bacterium DTU069 [LFRV]
4921
4997
+
Val
GAC
[ENA]
¡û
>W1610605578
LFSC01000009
Bacillota
Clostridiaceae bacterium DTU079 [LFSC]
232925
233001
+
Val
GAC
[ENA]
¡û
>W1610605985
LFSL01000141
Bacillota
Clostridiales bacterium DTU058 [LFSL]
925
849
-
Val
GAC
[ENA]
¡û
>W1710726651
LFRV01000053
Bacillota
Clostridiales bacterium DTU069 [LFRV]
4921
4997
+
Val
GAC
[ENA]
¡û
>W1710726865
LFSC01000009
Bacillota
Clostridiaceae bacterium DTU079 [LFSC]
232925
233001
+
Val
GAC
[ENA]
¡û
>W1710727272
LFSL01000141
Bacillota
Clostridiales bacterium DTU058 [LFSL]
925
849
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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