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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.153098 (49 seq.)
>W1710805022
LJZR01000003
Cyanobacteriota
Phormidesmis priestleyi Ana [LJZR]
256828
256752
-
Met
CAT
[ENA]
¡û
>W1711229686
LXYR01000001
Cyanobacteriota
Phormidesmis priestleyi BC1401 [LXYR]
101446
101522
+
Met
CAT
[ENA]
¡û
>W1711629786
MPPI01000017
Cyanobacteriota
Phormidesmis priestleyi ULC007 [MPPI]
75352
75428
+
Met
CAT
[ENA]
¡û
>W1711662025
MQTZ01000002
Cyanobacteriota
Leptolyngbya sp. 'hensonii' 'hensonii' [MQTZ]
84416
84340
-
Met
CAT
[ENA]
¡û
>W1711666751
MRCG01000002
Cyanobacteriota
Phormidium tenue NIES-30 [MRCG]
437580
437656
+
Met
CAT
[ENA]
¡û
>W131035993
AJUB01000005
Cyanobacteriota
Leptolyngbyaceae cyanobacterium JSC-12 JSC-12 [AJUB]
1372153
1372077
-
Met
CAT
[ENA]
¡û
>W131036281
ALVM01000010
Cyanobacteriota
Leptolyngbya boryana PCC 6306 [ALVM]
1283330
1283406
+
Met
CAT
[ENA]
¡û
>W131036422
ALVP01000029
Cyanobacteriota
Nodosilinea nodulosa PCC 7104 [ALVP]
67895
67819
-
Met
CAT
[ENA]
¡û
>W131063229
ANKN01000117
Cyanobacteriota
Prochlorothrix hollandica PCC 9006 [ANKN]
11787
11863
+
Met
CAT
[ENA]
¡û
>C025522
BA000039
Cyanobacteriota
Thermosynechococcus vestitus BP-1 [BA000039]
2183813
2183886
+
Met
CAT
[Ensembl]
¡û
>C171000046
AP014638
Cyanobacteriota
Leptolyngbya boryana IAM M-101 [AP014638]
4757587
4757511
-
Met
CAT
-
¡û
>C171000109
AP014642
Cyanobacteriota
Leptolyngbya boryana dg5 [AP014642]
4757587
4757511
-
Met
CAT
-
¡û
>C171127271
CP021983
Cyanobacteriota
Halomicronema hongdechloris C2206 [CP021983]
5044332
5044408
+
Met
CAT
-
¡û
>W141022505
AJTX01000324
Cyanobacteriota
Prochlorothrix hollandica PCC 9006 [AJTX]
543
619
+
Met
CAT
[ENA]
¡û
>W141038472
ALVV02000071
Cyanobacteriota
Leptolyngbya sp. PCC 6406 [ALVV]
167359
167283
-
Met
CAT
[ENA]
¡û
>WENV181233654
OFET01000028
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
257484
257408
-
fMet
CAT
[ENA]
¢þ
>WENV181414140
OGCL01000045
[OGCL] hot springs metagenome; Hot spring water
54076
54149
+
fMet
CAT
[ENA]
¢þ
>WENV181850233
OGWC01007009
[OGWC] freshwater metagenome; freshwater
244
168
-
fMet
CAT
[ENA]
¢þ
>WENV181852718
OGWH01000932
[OGWH] freshwater metagenome; freshwater
4089
4165
+
fMet
CAT
[ENA]
¢þ
>WENV181855419
OGWL01016149
[OGWL] freshwater metagenome; freshwater
192
116
-
fMet
CAT
[ENA]
¢þ
>W08010874
ABRV01000021
Cyanobacteriota
Synechococcus sp. PCC 7335 [ABRV]
442978
443054
+
Met
CAT
[ENA]
¡û
>W08011548
ABVJ01000016
Cyanobacteriota
Cyanothece sp. PCC 7425 [ABVJ]
38186
38113
-
Met
CAT
[ENA]
¡û
>C08000564
CP000828
Cyanobacteriota
Acaryochloris marina MBIC11017 [CP000828]
1812833
1812760
-
Met
CAT
[Ensembl]
¡û
>WENV170019055
BBPD01003409
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
11577
11504
-
Met
CAT
[ENA]
¢þ
>WENV170020091
BBPE01002828
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
20922
20995
+
Met
CAT
[ENA]
¢þ
>WENV170983799
MWVV01094527
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
403
327
-
Met
CAT
[ENA]
¢þ
>C181004815
AP018203
Cyanobacteriota
Leptolyngbya boryana NIES-2135 [AP018203]
2100370
2100446
+
Met
CAT
-
¡û
>C181030467
CP018092
Cyanobacteriota
Thermostichus lividus PCC 6715 [CP018092]
1344166
1344239
+
Met
CAT
-
¡û
>C191001197
AP018202
Cyanobacteriota
Thermostichus vulcanus NIES-2134 [AP018202]
287692
287765
+
Met
CAT
-
¡û
>C191085234
CP032152
Cyanobacteriota
Thermosynechococcus vestitus E542 [CP032152]
1627714
1627641
-
Met
CAT
-
¡û
>C141007937
CP006735
Cyanobacteriota
Thermosynechococcus sp. NK55a [CP006735]
1776002
1776075
+
Met
CAT
-
¡û
>C09103607
CP001344
Cyanobacteriota
Cyanothece sp. PCC 7425 [CP001344]
575843
575767
-
Met
CAT
[Ensembl]
¡û
>W1911219941
NRTA01000029
Cyanobacteriota
Leptolyngbya sp. BC1307 [NRTA]
24819
24895
+
Met
CAT
[ENA]
¡û
>W1911741963
QVFV01000013
Cyanobacteriota
Leptolyngbya sp. LK str. Lakshadweep [QVFV]
28726
28802
+
Met
CAT
[ENA]
¡û
>W1810267623
PQWO01000002
Cyanobacteriota
Acaryochloris thomasi RCC1774 [PQWO]
410106
410030
-
Met
CAT
[ENA]
¡û
>W1810366270
PVWG01000047
Cyanobacteriota
Phormidesmis priestleyi ULC007 [PVWG]
27619
27695
+
Met
CAT
[ENA]
¡û
>W1810366393
PVWK01000028
Cyanobacteriota
Stenomitos frigidus ULC18 [PVWK]
312
236
-
Met
CAT
[ENA]
¡û
>W1810398583
PYEQ01000069
Cyanobacteriota
filamentous cyanobacterium CCP5 [PYEQ]
634
558
-
Met
CAT
[ENA]
¡û
>W1810398620
PYER01000023
Cyanobacteriota
filamentous cyanobacterium CCT1 [PYER]
36547
36471
-
Met
CAT
[ENA]
¡û
>W1810400242
PYFY01000090
Cyanobacteriota
filamentous cyanobacterium CCP4 [PYFY]
5560
5636
+
Met
CAT
[ENA]
¡û
>W1810401274
PYGV01000005
Cyanobacteriota
filamentous cyanobacterium CCP3 [PYGV]
27273
27349
+
Met
CAT
[ENA]
¡û
>W1511108003
JJML01000019
Cyanobacteriota
Neosynechococcus sphagnicola sy1 CAUP A 1101 [JJML]
28385
28461
+
Met
CAT
[ENA]
¡û
>W1511324004
JQFA01000002
Cyanobacteriota
Leptolyngbya sp. KIOST-1 [JQFA]
2125984
2126060
+
Met
CAT
[ENA]
¡û
>W1511400859
JTHE01000274
Cyanobacteriota
Lyngbya confervoides BDU141951 [JTHE]
2222276
2222200
-
Met
CAT
[ENA]
¡û
>W1511401878
JTJD01000271
Cyanobacteriota
Aphanocapsa montana BDHKU210001 [JTJD]
2226017
2225941
-
Met
CAT
[ENA]
¡û
>W11160107
AFEJ01000019
Cyanobacteriota
Acaryochloris sp. CCMEE 5410 [AFEJ]
74243
74167
-
Met
CAT
[ENA]
¡û
>W1610668879
LJZR01000003
Cyanobacteriota
Phormidesmis priestleyi Ana [LJZR]
256828
256752
-
Met
CAT
[ENA]
¡û
>W1611013556
LXYR01000001
Cyanobacteriota
Phormidesmis priestleyi BC1401 [LXYR]
101446
101522
+
Met
CAT
[ENA]
¡û
>W1710698085
LAZT01000004
Cyanobacteriota
Halomicronema hongdechloris C2206 [LAZT]
43400
43324
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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