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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.161529 (51 seq.)
>W1710979346
LPNY01000042
Campylobacterota
Arcobacter sp. EP1 [LPNY]
295049
295125
+
Met
CAT
[ENA]
¡û
>W1711584523
MNYP01000043
Campylobacterota
Helicobacteraceae bacterium CG2_30_36_10 [MNYP]
4697
4621
-
Met
CAT
[ENA]
¡û
>W1711584525
MNYP01000043
Campylobacterota
Helicobacteraceae bacterium CG2_30_36_10 [MNYP]
4513
4437
-
Met
CAT
[ENA]
¡û
>C025446
CP000153
Campylobacterota
Sulfurimonas denitrificans DSM 1251 [CP000153]
1247908
1247984
+
Met
CAT
[Ensembl]
¡û
>WENV180345955
OBLN01013905
[OBLN] sediment metagenome; sediment
1449
1525
+
fMet
CAT
[ENA]
¢þ
>WENV180583969
OCNB01304566
[OCNB] metagenome; diffuse fluid
198
122
-
fMet
CAT
[ENA]
¢þ
>WENV181216295
OFCB01017715
[OFCB] metagenome; hydrothermal vent
84
8
-
fMet
CAT
[ENA]
¢þ
>WENV181373454
OFQX01065327
[OFQX] wastewater metagenome; WWTP Novara (Effluent)
118
42
-
fMet
CAT
[ENA]
¢þ
>WENV183703352
PDVJ01010568
[PDVJ] alkali sediment metagenome; glacial lake sediment
1230
1154
-
fMet
CAT
[ENA]
¢þ
>WENV183711401
PDWI01068739
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
22
98
+
fMet
CAT
[ENA]
¢þ
>WENV183713950
PDWI01160280
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1521
1445
-
fMet
CAT
[ENA]
¢þ
>WENV170570975
FLOH01000045
[FLOH] marine metagenome; water
199955
200031
+
Met
CAT
[ENA]
¢þ
>WENV170572460
FLOH01000894
[FLOH] marine metagenome; water
26845
26921
+
Met
CAT
[ENA]
¢þ
>WENV170573041
FLOH01004406
[FLOH] marine metagenome; water
142
66
-
Met
CAT
[ENA]
¢þ
>WENV170606060
FUWD010596736
[FUWD] metagenome; unknown
28
104
+
Met
CAT
[ENA]
¢þ
>WENV170609230
FUWD011329234
[FUWD] metagenome; unknown
187
111
-
Met
CAT
[ENA]
¢þ
>WENV170635437
JDSF01021183
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
111
187
+
Met
CAT
[ENA]
¢þ
>WENV170640692
JFJP01024009
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
32821
32897
+
Met
CAT
[ENA]
¢þ
>WENV170646420
JQGR01003097
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
629
553
-
Met
CAT
[ENA]
¢þ
>WENV170646432
JQGR01003773
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
574
650
+
Met
CAT
[ENA]
¢þ
>WENV170657899
JTFP01031557
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
439
515
+
Met
CAT
[ENA]
¢þ
>WENV170657901
JTFP01031557
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
727
803
+
Met
CAT
[ENA]
¢þ
>WENV170695316
LGVE01075219
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
365
289
-
Met
CAT
[ENA]
¢þ
>WENV170780525
MAAB01004195
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
1952
1876
-
Met
CAT
[ENA]
¢þ
>WENV170780691
MAAB01013993
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
2115
2191
+
Met
CAT
[ENA]
¢þ
>WENV170780806
MAAB01023525
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
42
118
+
Met
CAT
[ENA]
¢þ
>WENV170780853
MAAB01026474
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
916
840
-
Met
CAT
[ENA]
¢þ
>WENV170781357
MAAB01032619
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
594
670
+
Met
CAT
[ENA]
¢þ
>WENV170781360
MAAB01032619
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
935
1011
+
Met
CAT
[ENA]
¢þ
>WENV170781785
MAAC01000414
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
3755
3679
-
Met
CAT
[ENA]
¢þ
>WENV170781789
MAAC01000414
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
3367
3291
-
Met
CAT
[ENA]
¢þ
>WENV170782014
MAAC01006227
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
3446
3370
-
Met
CAT
[ENA]
¢þ
>WENV170782976
MAAC01012363
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
1140
1064
-
Met
CAT
[ENA]
¢þ
>WENV170782979
MAAC01012363
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
799
723
-
Met
CAT
[ENA]
¢þ
>C181197060
CP031219
Campylobacterota
Malaciobacter mytili LMG 24559 [CP031219]
2056830
2056754
-
Met
CAT
-
¡û
>C181197070
CP031219
Campylobacterota
Malaciobacter mytili LMG 24559 [CP031219]
1427449
1427373
-
Met
CAT
-
¡û
>W09103226
AAJA01000001
Campylobacterota
Sulfurimonas denitrificans ATCC 33889 [AAJA]
1597697
1597621
-
Met
CAT
[ENA]
¡û
>W09111619
ABXD01000018
Campylobacterota
Sulfurimonas gotlandica GD 1 [ABXD]
52129
52053
-
Met
CAT
[ENA]
¡û
>W1910810866
MUXE01000014
Campylobacterota
Arcobacter caeni RW17-10 [MUXE]
4848
4924
+
Met
CAT
[ENA]
¡û
>W1910810890
MUXE01000024
Campylobacterota
Arcobacter caeni RW17-10 [MUXE]
21158
21234
+
Met
CAT
[ENA]
¡û
>W1911424542
NXGH01000002
Campylobacterota
Aliarcobacter cryaerophilus LMG 9871 [NXGH]
44274
44198
-
Met
CAT
[ENA]
¡û
>W1911424546
NXGH01000002
Campylobacterota
Aliarcobacter cryaerophilus LMG 9871 [NXGH]
43852
43776
-
Met
CAT
[ENA]
¡û
>W1911426212
NXID01000069
Campylobacterota
Malaciobacter mytili LMG 24559 CECT 7386 [NXID]
3233
3157
-
Met
CAT
[ENA]
¡û
>W1911576257
PDJW01000060
Campylobacterota
Malaciobacter mytili T234 [PDJW]
3253
3177
-
Met
CAT
[ENA]
¡û
>W1911717875
QQTC01000053
Campylobacterota
Arcobacter sp. HD9-500m-PIT-SAG03 [QQTC]
5782
5706
-
Met
CAT
[ENA]
¡û
>W1511327966
JQIT01000008
Campylobacterota
Sulfuricurvum sp. PC08-66 [JQIT]
160732
160656
-
Met
CAT
[ENA]
¡û
>C11120690
CP002355
Campylobacterota
Sulfuricurvum kujiense DSM 16994 [CP002355]
1236436
1236360
-
Met
CAT
[Ensembl]
¡û
>C11120691
CP002355
Campylobacterota
Sulfuricurvum kujiense DSM 16994 [CP002355]
1236302
1236226
-
Met
CAT
[Ensembl]
¡û
>W121004878
AFRZ01000001
Campylobacterota
Sulfurimonas gotlandica GD1 [AFRZ]
2591391
2591315
-
Met
CAT
[ENA]
¡û
>W1610835337
LPNY01000042
Campylobacterota
Arcobacter sp. EP1 [LPNY]
295049
295125
+
Met
CAT
[ENA]
¡û
>WENV078071
AAFY01016239
Fossil microbial community from Whale Fall (Santa Cruz Basin)
329
407
+
Met
CAT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK