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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.162999 (94 seq.)
>W1710870824
LMKV01000001
Alphaproteobacteria
Sphingobium sp. Leaf26 [LMKV]
70276
70200
-
Met
CAT
[ENA]
¡û
>W1710876729
LMPM01000001
Alphaproteobacteria
Sphingomonas sp. Leaf357 [LMPM]
2448856
2448932
+
Met
CAT
[ENA]
¡û
>W1712076958
NGUN01000003
Alphaproteobacteria
Sphingobium sp. GW456-12-10-14-TSB1 [NGUN]
773557
773633
+
Met
CAT
[ENA]
¡û
>W131241113
BARE01000007
Alphaproteobacteria
Sphingobium xenophagum NBRC 107872 [BARE]
59486
59562
+
Met
CAT
[ENA]
¡û
>W131251291
CAVK010000035
Alphaproteobacteria
Sphingobium indicum BiD32 [CAVK]
8269
8193
-
Met
CAT
[ENA]
¡û
>WENV180020635
FTCZ01007740
[FTCZ] metagenome; soil
15531
15455
-
Ile2
CAT
[ENA]
¡û
>WENV180026947
FTIV01005215
[FTIV] metagenome; soil
204
128
-
Ile2
CAT
[ENA]
¡û
>WENV180027137
FTIW01265252
[FTIW] metagenome; soil
74
150
+
Ile2
CAT
[ENA]
¡û
>WENV180105216
OAPD01016695
[OAPD] marine metagenome; 2010
384
460
+
Ile2
CAT
[ENA]
¡û
>WENV180107885
OAPH01016104
[OAPH] marine metagenome; seawater
518
594
+
Ile2
CAT
[ENA]
¡û
>WENV180344618
OBLL01067702
[OBLL] soil metagenome; soil
294
218
-
Ile2
CAT
[ENA]
¡û
>WENV180364119
OBNZ01096406
[OBNZ] marine metagenome; ENVO:00002010
330
254
-
Ile2
CAT
[ENA]
¡û
>WENV181227762
OFDN01040722
[OFDN] hot springs metagenome; Water
466
390
-
Ile2
CAT
[ENA]
¡û
>WENV181375097
OFQY01046471
[OFQY] wastewater metagenome; Exp Tend VB 10WW
599
523
-
Ile2
CAT
[ENA]
¡û
>WENV181386576
OFRL01007084
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
2099
2023
-
Ile2
CAT
[ENA]
¡û
>WENV183746629
POYE01040856
[POYE] biofilm metagenome; steel pipe from biofilm reactor
312
388
+
Ile2
CAT
[ENA]
¡û
>WENV170136137
CENV01005061
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
7652
7728
+
Met
CAT
[ENA]
¡û
>WENV170372332
CETS01084417
[CETS] marine metagenome genome assembly TARA_122_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
773
697
-
Met
CAT
[ENA]
¡û
>WENV170668329
LADL02002961
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
1465
1541
+
Met
CAT
[ENA]
¡û
>C181072098
CP022745
Alphaproteobacteria
Sphingobium xenophagum C1 [CP022745, CP022746]
2542776
2542852
+
Met
CAT
-
¡û
>C191002730
AP018518
Alphaproteobacteria
Sphingobium sp. YG1 [AP018518, AP018519]
724452
724528
+
Met
CAT
-
¡û
>C191154776
CP037913
Alphaproteobacteria
Sphingomonas sp. AAP5 [CP037913]
1783467
1783391
-
Met
CAT
-
¡û
>W1910007017
BBQY01000016
Alphaproteobacteria
Sphingobium xenophagum OW59 [BBQY]
21693
21617
-
Met
CAT
[ENA]
¡û
>W1910199122
FBVT01000011
Alphaproteobacteria
Sphingobium sp. Z007 [FBVT]
289
365
+
Met
CAT
[ENA]
¡û
>W1910199186
FBVU01000037
Alphaproteobacteria
Sphingobium sp. Z007 [FBVU]
192
268
+
Met
CAT
[ENA]
¡û
>W1910199238
FBVV01000018
Alphaproteobacteria
Sphingobium sp. Z007 [FBVV]
247837
247761
-
Met
CAT
[ENA]
¡û
>W1910199272
FBVW01000002
Alphaproteobacteria
Sphingobium sp. Z007 [FBVW]
193172
193248
+
Met
CAT
[ENA]
¡û
>W1910199342
FBVX01000039
Alphaproteobacteria
Sphingobium sp. Z007 [FBVX]
40003
40079
+
Met
CAT
[ENA]
¡û
>W1910199988
FBXK01000005
Alphaproteobacteria
Sphingobium sp. Z007 [FBXK]
1409110
1409034
-
Met
CAT
[ENA]
¡û
>W1911746105
QVRA01000015
Alphaproteobacteria
Sphingobium sp. EO9 [QVRA]
33152
33076
-
Met
CAT
[ENA]
¡û
>W1810400889
PYGL01000013
Alphaproteobacteria
Sphingobium sp. AEW4 [PYGL]
56567
56643
+
Met
CAT
[ENA]
¡û
>SRA1016469
SRR023846.513758
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
129
53
-
Met
CAT
[SRA]
>C151073186
CP010836
Alphaproteobacteria
Sphingomonas hengshuiensis WHSC-8 [CP010836]
923149
923225
+
Met
CAT
[Ensembl]
¡û
>W2010075375
BBQY01000016
Alphaproteobacteria
Sphingobium xenophagum OW59 [BBQY]
21693
21617
-
Ile2
CAT
[ENA]
¡û
>W2010369960
CAHJWJ010000001
Alphaproteobacteria
Sphingomonas bacterium [CAHJWJ]
190780
190704
-
Ile2
CAT
[ENA]
¡û
>W2010370454
CAHJWW010000136
Alphaproteobacteria
Sphingomonas bacterium [CAHJWW]
2447
2522
+
Ile2
CAT
[ENA]
¡û
>W2010373337
FBVT01000011
Alphaproteobacteria
Sphingobium sp. Z007 [FBVT]
289
365
+
Ile2
CAT
[ENA]
¡û
>W2010373401
FBVU01000037
Alphaproteobacteria
Sphingobium sp. Z007 [FBVU]
192
268
+
Ile2
CAT
[ENA]
¡û
>W2010373453
FBVV01000018
Alphaproteobacteria
Sphingobium sp. Z007 [FBVV]
247837
247761
-
Ile2
CAT
[ENA]
¡û
>W2010373487
FBVW01000002
Alphaproteobacteria
Sphingobium sp. Z007 [FBVW]
193172
193248
+
Ile2
CAT
[ENA]
¡û
>W2010373557
FBVX01000039
Alphaproteobacteria
Sphingobium sp. Z007 [FBVX]
40003
40079
+
Ile2
CAT
[ENA]
¡û
>W2010374203
FBXK01000005
Alphaproteobacteria
Sphingobium sp. Z007 [FBXK]
1409110
1409034
-
Ile2
CAT
[ENA]
¡û
>W2010706294
JACHKD010000001
Alphaproteobacteria
Sphingobium sp. B9G3B [JACHKD]
11644
11720
+
Ile2
CAT
[ENA]
¡û
>W2010706392
JACHKE010000001
Alphaproteobacteria
Sphingobium sp. B9G5A [JACHKE]
2779242
2779166
-
Ile2
CAT
[ENA]
¡û
>W2010731788
JACIJI010000002
Alphaproteobacteria
Stakelama sediminis DSM 27203 [JACIJI]
577586
577510
-
Ile2
CAT
[ENA]
¡û
>W2011309411
QVRA01000015
Alphaproteobacteria
Sphingobium sp. EO9 [QVRA]
33152
33076
-
Ile2
CAT
[ENA]
¡û
>W2011407552
RCZC01000002
Alphaproteobacteria
Sphingomonas glacialis E6.1 [RCZC]
721544
721468
-
Ile2
CAT
[ENA]
¡û
>W2011407725
RCZF01000001
Alphaproteobacteria
Sphingomonas koreensis S11.1Y [RCZF]
1211688
1211612
-
Ile2
CAT
[ENA]
¡û
>W2011408085
RCZN01000001
Alphaproteobacteria
Sphingomonas koreensis S12 [RCZN]
544497
544573
+
Ile2
CAT
[ENA]
¡û
>W2011495096
RWKS01000023
Alphaproteobacteria
Sphingomonas sp. TF3 [RWKS]
2545
2469
-
Ile2
CAT
[ENA]
¡û
>W2011538886
SCNH01000038
Alphaproteobacteria
Sphingomonas sp. 3F27F9 [SCNH]
1016
940
-
Ile2
CAT
[ENA]
¡û
>W2011556391
SEOO01000023
Alphaproteobacteria
Sphingobium cupriresistens CCTCC AB 2011146 [SEOO]
37618
37542
-
Ile2
CAT
[ENA]
¡û
>W2011980125
VDBZ01000001
Alphaproteobacteria
Sphingobium sp. B2 [VDBZ]
1559903
1559827
-
Ile2
CAT
[ENA]
¡û
>W2012045940
VIUU01000012
Alphaproteobacteria
Sphingobium sp. AEW010 [VIUU]
56370
56446
+
Ile2
CAT
[ENA]
¡û
>W2012046101
VIUX01000012
Alphaproteobacteria
Sphingobium sp. AEW013 [VIUX]
75060
74984
-
Ile2
CAT
[ENA]
¡û
>W2012046148
VIUY01000012
Alphaproteobacteria
Sphingobium sp. AEW001 [VIUY]
56370
56446
+
Ile2
CAT
[ENA]
¡û
>W2012208311
VYPZ01000006
Alphaproteobacteria
Sphingobium limneticum DSM 25076 [VYPZ]
40293
40217
-
Ile2
CAT
[ENA]
¡û
>W2012208351
VYQA01000002
Alphaproteobacteria
Sphingobium paulinellae KACC 19283 [VYQA]
22685
22609
-
Ile2
CAT
[ENA]
¡û
>W2012208404
VYQB01000002
Alphaproteobacteria
Sphingobium algicola KACC 19284 [VYQB]
22685
22609
-
Ile2
CAT
[ENA]
¡û
>W2110020658
BMDW01000002
Alphaproteobacteria
Sphingomonas psychrolutea CGMCC 1.10106 [BMDW]
28180
28256
+
Ile2
CAT
[ENA]
¡û
>W2110051919
BNAQ01000001
Alphaproteobacteria
Sphingomonas glacialis CGMCC 1.8957 [BNAQ]
644795
644719
-
Ile2
CAT
[ENA]
¡û
>W2110362802
JADOUC010000001
Alphaproteobacteria
Sphingobium sp. JAI105 [JADOUC]
364548
364624
+
Ile2
CAT
[ENA]
¡û
>W2110640968
JAHRGM010000067
Alphaproteobacteria
Sphingobium sp. AS12 [JAHRGM]
271492
271568
+
Ile2
CAT
[ENA]
¡û
>C211132608
CP060388
Alphaproteobacteria
Sphingobium sp. KCTC 72723 [CP060388]
1423661
1423585
-
Ile2
CAT
-
¡û
>C211140900
CP061035
Alphaproteobacteria
Sphingomonas aliaeris [CP061035]
2054889
2054813
-
Ile2
CAT
-
¡û
>C211140943
CP061038
Alphaproteobacteria
Sphingomonas alpina DSM 22537 [CP061038]
2060115
2060039
-
Ile2
CAT
-
¡û
>C211346984
CP076556
Alphaproteobacteria
Sphingobium hydrophobicum PH3-15 [CP076556, CP076557]
360459
360383
-
Ile2
CAT
-
¡û
>C231230483
CP086594
Alphaproteobacteria
Sphingomonas radiodurans S9-5 [CP086594]
3485502
3485427
-
Ile2
CAT
-
¡û
>C231401145
CP098401
Alphaproteobacteria
Sphingomonas sp. RMG20 [CP098401]
1281751
1281675
-
Ile2
CAT
-
¡û
>C231441505
CP101740
Alphaproteobacteria
Sphingomonas qomolangmaensis S5-59 [CP101740]
1186142
1186066
-
Ile2
CAT
-
¡û
>C231463791
CP103057
Alphaproteobacteria
Sphingomonas sp. ZFBP2030 [CP103057]
522669
522593
-
Ile2
CAT
-
¡û
>C231536445
CP110678
Alphaproteobacteria
Sphingomonas sp. S1-29 [CP110678]
294652
294728
+
Ile2
CAT
-
¡û
>C231536530
CP110679
Alphaproteobacteria
Sphingomonas sp. S6-11 [CP110679]
786905
786829
-
Ile2
CAT
-
¡û
>C231590377
CP117158
Alphaproteobacteria
Sphingobium sp. AntQ-1 [CP117158, CP117159]
178792
178716
-
Ile2
CAT
-
¡û
>C241006603
AP022672
Alphaproteobacteria
Sphingomonas sp. HMP6 [AP022672]
578028
577952
-
Ile2
CAT
-
¡û
>C241064582
CP042306
Alphaproteobacteria
Sphingomonas panacisoli HKS19 [CP042306]
1572836
1572912
+
Ile2
CAT
-
¡û
>C241131752
CP048817
Alphaproteobacteria
Sphingomonas sp. So64.6b [CP048817]
1364443
1364519
+
Ile2
CAT
-
¡û
>W1510756952
JACT01000001
Alphaproteobacteria
Sphingobium cupriresistens LL01 [JACT]
1898250
1898174
-
Met
CAT
[ENA]
¡û
>W1511352567
JROH01000016
Alphaproteobacteria
Sphingomonas sp. 37zxx [JROH]
27603
27679
+
Met
CAT
[ENA]
¡û
>W1511361489
JSBN01000049
Alphaproteobacteria
Sphingomonas sp. Ant H11 [JSBN]
7623
7699
+
Met
CAT
[ENA]
¡û
>W1511581097
LARW01000051
Alphaproteobacteria
Sphingomonas sp. SRS2 [LARW]
982
1058
+
Met
CAT
[ENA]
¡û
>W121031769
AHHA01000034
Alphaproteobacteria
Sphingomonas sp. PAMC 26617 [AHHA]
109026
109102
+
Met
CAT
[ENA]
¡û
>W121033257
AHIR01000048
Alphaproteobacteria
Sphingomonas echinoides ATCC 14820 [AHIR]
61330
61406
+
Met
CAT
[ENA]
¡û
>W121033289
AHIS01000095
Alphaproteobacteria
Sphingomonas sp. PAMC 26605 [AHIS]
244633
244557
-
Met
CAT
[ENA]
¡û
>W121046810
AIDW01000016
Alphaproteobacteria
Sphingomonas sp. PAMC 26621 [AIDW]
138002
138078
+
Met
CAT
[ENA]
¡û
>W121084329
AKIB01000033
Alphaproteobacteria
Sphingobium xenophagum QYY [AKIB]
4046
3970
-
Met
CAT
[ENA]
¡û
>W1610076529
BCYU01000065
Alphaproteobacteria
Sphingomonas asaccharolytica NBRC 15499 [BCYU]
15222
15298
+
Met
CAT
[ENA]
¡û
>W1610076647
BCYX01000006
Alphaproteobacteria
Sphingomonas mali NBRC 15500 [BCYX]
148132
148208
+
Met
CAT
[ENA]
¡û
>W1610733170
LMKV01000001
Alphaproteobacteria
Sphingobium sp. Leaf26 [LMKV]
70276
70200
-
Met
CAT
[ENA]
¡û
>W1610739075
LMPM01000001
Alphaproteobacteria
Sphingomonas sp. Leaf357 [LMPM]
2448856
2448932
+
Met
CAT
[ENA]
¡û
>W1710074218
BCYU01000065
Alphaproteobacteria
Sphingomonas asaccharolytica NBRC 15499 [BCYU]
15222
15298
+
Met
CAT
[ENA]
¡û
>W1710074336
BCYX01000006
Alphaproteobacteria
Sphingomonas mali NBRC 15500 [BCYX]
148132
148208
+
Met
CAT
[ENA]
¡û
>W1710542230
FNYZ01000008
Alphaproteobacteria
Sphingobium sp. AP50 [FNYZ]
210184
210260
+
Met
CAT
[ENA]
¡û
>W1710551586
FOGE01000022
Alphaproteobacteria
Sphingobium sp. YR768 [FOGE]
76075
76151
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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