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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.163825 (46 seq.)
>A171000093
AP011952
Euryarchaeota
Methanothermobacter sp. CaT2 [AP011952]
936700
936773
+
Thr
TGT
-
¡û
>A171000902
CP001710
Euryarchaeota
Methanothermobacter marburgensis str. Marburg [CP001710]
1317254
1317327
+
Thr
TGT
-
¡û
>A171000943
CP001719
Euryarchaeota
Methanobrevibacter ruminantium M1 [CP001719]
2351254
2351181
-
Thr
TGT
-
¡û
>A171004001
CP006933
Euryarchaeota
Methanobacterium formicicum BRM9 [CP006933]
2132249
2132175
-
Thr
TGT
-
¡û
>A171005843
CP010834
Euryarchaeota
Methanobrevibacter sp. YE315 [CP010834]
1892071
1891998
-
Thr
TGT
-
¡û
>A171006558
CP014265
Euryarchaeota
Methanobrevibacter olleyae YLM1 [CP014265]
1548186
1548113
-
Thr
TGT
-
¡û
>A171007301
HG425166
Euryarchaeota
Methanobacterium sp. MB1 [HG425166]
224067
224141
+
Thr
TGT
-
¡û
>A171007355
LN515531
Euryarchaeota
Methanobacterium formicicum [LN515531]
1603535
1603609
+
Thr
TGT
-
¡û
>A171007386
LN734822
Euryarchaeota
Methanobacterium formicicum [LN734822]
260568
260642
+
Thr
TGT
-
¡û
>A171007705
LT608329
Euryarchaeota
Methanothermobacter wolfeii [LT608329]
1324850
1324923
+
Thr
TGT
-
¡û
>WENV180036736
FVAA010298026
[FVAA] soil metagenome; Soil
101
175
+
Thr
TGT
[ENA]
¢þ
>WENV180686071
OCVV012882012
[OCVV] gut metagenome; gut
5228
5155
-
Thr
TGT
[ENA]
¢þ
>WENV180686076
OCVV012882012
[OCVV] gut metagenome; gut
5228
5155
-
Thr
TGT
[ENA]
¢þ
>WENV181229908
OFEK01000116
[OFEK] activated sludge metagenome; Anaerobic digester
14155
14229
+
Thr
TGT
[ENA]
¢þ
>WENV181230173
OFEK01000389
[OFEK] activated sludge metagenome; Anaerobic digester
2963
3037
+
Thr
TGT
[ENA]
¢þ
>WENV181416282
OGCL01068187
[OGCL] hot springs metagenome; Hot spring water
354
281
-
Thr
TGT
[ENA]
¢þ
>At1656
AE000666
Euryarchaeota
Methanothermobacter thermautotrophicus str. Delta H [AE000666]
953939
954012
+
Thr
TGT
[Ensembl]
¡û
>WENV170634741
JAHE01047558
[JAHE] sediment metagenome; lake sediment
464
388
-
Thr
TGT
[ENA]
¢þ
>WENV170646125
JQGF01103221
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
38
114
+
Thr
TGT
[ENA]
¢þ
>WENV170651574
JRYF01094348
[JRYF] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
1007
931
-
Thr
TGT
[ENA]
¢þ
>WENV170668915
LAHQ01119733
[LAHQ] activated sludge metagenome; sample C-2; Sludge from acidogenic chamber (second chamber) of Anaerobic Baffled Reactor over
83
159
+
Thr
TGT
[ENA]
¢þ
>WENV170675833
LDZQ01000861
[LDZQ] terrestrial metagenome; oil reservoir sample I2
77
1
-
Thr
TGT
[ENA]
¢þ
>WENV170675890
LDZQ01001192
[LDZQ] terrestrial metagenome; oil reservoir sample I2
3009
3085
+
Thr
TGT
[ENA]
¢þ
>WENV170676687
LDZS01001915
[LDZS] terrestrial metagenome; oil reservoir sample K3
4547
4471
-
Thr
TGT
[ENA]
¢þ
>WENV170677300
LDZT01004896
[LDZT] terrestrial metagenome; oil reservoir sample SB1
14762
14686
-
Thr
TGT
[ENA]
¢þ
>WENV170972469
MTKX01031377
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1139
1063
-
Thr
TGT
[ENA]
¢þ
>WENV170978685
MTKZ01058273
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1729
1653
-
Thr
TGT
[ENA]
¢þ
>W1910229671
FOAK01000011
Euryarchaeota
Methanobrevibacter gottschalkii DSM 11978 [FOAK]
39102
39029
-
Thr
TGT
[ENA]
¡û
>W1910230526
FOTL01000002
Euryarchaeota
Methanobrevibacter olleyae DSM 16632 [FOTL]
91588
91515
-
Thr
TGT
[ENA]
¡û
>W1910574916
JQJK01000008
Euryarchaeota
Methanobacterium veterum MK4 [JQJK]
598513
598586
+
Thr
TGT
[ENA]
¡û
>W1910574944
JQKN01000001
Euryarchaeota
Methanobacterium arcticum M2 [JQKN]
596847
596920
+
Thr
TGT
[ENA]
¡û
>W1910583635
JXMW01000028
Euryarchaeota
Methanobrevibacter arboriphilus JCM 13429 = DSM 1125 DH1 [JXMW]
39062
39135
+
Thr
TGT
[ENA]
¡û
>W1910635142
LMVM01000023
Euryarchaeota
Methanobacterium bryantii M.o.H. [LMVM]
322692
322765
+
Thr
TGT
[ENA]
¡û
>W1910655416
LZPL01000021
Euryarchaeota
Methanobrevibacter sp. A27 [LZPL]
3376
3449
+
Thr
TGT
[ENA]
¡û
>W1910655440
LZPM01000006
Euryarchaeota
Methanobacterium sp. A39 [LZPM]
86208
86281
+
Thr
TGT
[ENA]
¡û
>W1910832135
MZGS01000023
Euryarchaeota
Methanobrevibacter thaueri DSM 11995 [MZGS]
160592
160519
-
Thr
TGT
[ENA]
¡û
>W1911690454
QLOE01000003
Euryarchaeota
Methanothermobacter tenebrarum MCM B 1447 [QLOE]
21330
21257
-
Thr
TGT
[ENA]
¡û
>W1911722795
QREL01000001
Euryarchaeota
Methanothermobacter defluvii DSM 7466 [QREL]
287926
287853
-
Thr
TGT
[ENA]
¡û
>W1610006247
AMGN01000088
Euryarchaeota
Methanobacterium sp. Maddingley MBC34 [AMGN]
623
547
-
Thr
TGT
[ENA]
¡û
>W1610011007
AMPO01000003
Euryarchaeota
Methanobacterium formicicum DSM 3637 [AMPO]
58738
58814
+
Thr
TGT
[ENA]
¡û
>W1610045141
BBBD01000133
Euryarchaeota
Methanobrevibacter arboriphilus JCM 9315 [BBBD]
4332
4405
+
Thr
TGT
[ENA]
¡û
>W1610049173
BBET01000004
Euryarchaeota
Methanobrevibacter arboriphilus JCM 13429 = DSM 1125 [BBET]
2475
2548
+
Thr
TGT
[ENA]
¡û
>W1610083223
CBVX010000002
Euryarchaeota
Methanobrevibacter arboriphilus ANOR1 [CBVX]
43181
43254
+
Thr
TGT
[ENA]
¡û
>W1610613854
LGGL01000003
Euryarchaeota
Methanobacterium sp. 42_16 [LGGL]
14762
14686
-
Thr
TGT
[ENA]
¡û
>W1610990745
LWMV01000212
Euryarchaeota
Methanobrevibacter curvatus DSM 11111 [LWMV]
9979
9906
-
Thr
TGT
[ENA]
¡û
>W1610990776
LWMW01000126
Euryarchaeota
Methanobrevibacter cuticularis DSM 11139 [LWMW]
58722
58649
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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