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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.173314 (7 seq.)
>W1711395510
METS01000006
Unclassified
candidate division WOR-1 bacterium RIFOXYA12_FULL_43_27 [METS]
4599
4525
-
Arg
CCT
[ENA]
¡û
>W1711395697
METX01000001
Unclassified
candidate division WOR-1 bacterium RIFOXYA2_FULL_46_56 [METX]
585215
585289
+
Arg
CCT
[ENA]
¡û
>W1711396020
MEUE01000001
Unclassified
candidate division WOR-1 bacterium RIFOXYB2_FULL_46_45 [MEUE]
442621
442547
-
Arg
CCT
[ENA]
¡û
>W1711396242
MEUJ01000004
Unclassified
candidate division WOR-1 bacterium RIFOXYC2_FULL_46_14 [MEUJ]
160265
160191
-
Arg
CCT
[ENA]
¡û
>WENV170002929
AGTN01171847
[AGTN] bioreactor metagenome; poplar biomass
114
190
+
Arg
CCT
[ENA]
¡û
>WENV170713526
LNFM01033887
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
4080
4156
+
Arg
CCT
[ENA]
¡û
>W141564398
JIAS01000019
Alphaproteobacteria
Dongia sp. URHE0060 [JIAS]
266673
266597
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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