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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.175843 (42 seq.)
>WENV180097218
MTBK01175276
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
273
197
-
Asp
GTC
[ENA]
¡û
>WENV180098683
MTBK01261133
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
818
742
-
Asp
GTC
[ENA]
¡û
>W141088584
AUVG01000044
Bacillota
[Clostridium] cellulosi CS-4-4 [AUVG]
20482
20558
+
Asp
GTC
[ENA]
¡û
>WENV170561564
CZCA01013932
[CZCA] anaerobic digester metagenome; anaerobic digester
117
41
-
Asp
GTC
[ENA]
¡û
>WENV170684146
LFRM01022839
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
19904
19980
+
Asp
GTC
[ENA]
¡û
>WENV170685546
LFRM01097365
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
178
102
-
Asp
GTC
[ENA]
¡û
>WENV170686615
LFRM01154891
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
249
325
+
Asp
GTC
[ENA]
¡û
>WENV170688750
LFRM01260413
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
408
332
-
Asp
GTC
[ENA]
¡û
>WENV170969636
MTKW01035206
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
123
199
+
Asp
GTC
[ENA]
¡û
>W1910665318
MCHZ01000002
Bacillota
Caminicella sporogenes AM 1114 [MCHZ]
44110
44034
-
Asp
GTC
[ENA]
¡û
>W1910665339
MCHZ01000005
Bacillota
Caminicella sporogenes AM 1114 [MCHZ]
53148
53224
+
Asp
GTC
[ENA]
¡û
>W1910665365
MCHZ01000011
Bacillota
Caminicella sporogenes AM 1114 [MCHZ]
1218
1142
-
Asp
GTC
[ENA]
¡û
>W1910665377
MCHZ01000013
Bacillota
Caminicella sporogenes AM 1114 [MCHZ]
17499
17575
+
Asp
GTC
[ENA]
¡û
>W1910665398
MCHZ01000030
Bacillota
Caminicella sporogenes AM 1114 [MCHZ]
299
375
+
Asp
GTC
[ENA]
¡û
>W2010806259
MCHZ01000002
Bacillota
Caminicella sporogenes AM 1114 [MCHZ]
44110
44034
-
Asp
GTC
[ENA]
¡û
>W2010806280
MCHZ01000005
Bacillota
Caminicella sporogenes AM 1114 [MCHZ]
53148
53224
+
Asp
GTC
[ENA]
¡û
>W2010806306
MCHZ01000011
Bacillota
Caminicella sporogenes AM 1114 [MCHZ]
1218
1142
-
Asp
GTC
[ENA]
¡û
>W2010806318
MCHZ01000013
Bacillota
Caminicella sporogenes AM 1114 [MCHZ]
17499
17575
+
Asp
GTC
[ENA]
¡û
>W2010806339
MCHZ01000030
Bacillota
Caminicella sporogenes AM 1114 [MCHZ]
299
375
+
Asp
GTC
[ENA]
¡û
>C231539414
CP110889
Bacillota
Thermoclostridium stercorarium RKWS1 [CP110889]
1353947
1354023
+
Asp
GTC
-
¡û
>C161076027
CP014672
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum DSM 2910 [CP014672]
1360882
1360958
+
Asp
GTC
[Ensembl]
¡û
>C161076075
CP014673
Bacillota
Thermoclostridium stercorarium subsp. leptospartum DSM 9219 [CP014673]
1381314
1381390
+
Asp
GTC
[Ensembl]
¡û
>W1610043731
BAZZ01000025
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum JCM 9324 [BAZZ]
20401
20477
+
Asp
GTC
[ENA]
¡û
>C131011043
CP003992
Bacillota
Thermoclostridium stercorarium subsp. stercorarium DSM 8532 [CP003992]
1359100
1359176
+
Asp
GTC
-
¡û
>C131011909
CP004044
Bacillota
Thermoclostridium stercorarium subsp. stercorarium DSM 8532 [CP004044]
1359574
1359650
+
Asp
GTC
-
¡û
>W1610605161
LFRR01000008
Bacillota
Clostridiaceae bacterium DTU054 [LFRR]
19904
19980
+
Asp
GTC
[ENA]
¡û
>W1610605329
LFRV01000050
Bacillota
Clostridiales bacterium DTU069 [LFRV]
249
325
+
Asp
GTC
[ENA]
¡û
>W1610605658
LFSE01000029
Bacillota
Clostridiales bacterium DTU074 [LFSE]
3148
3072
-
Asp
GTC
[ENA]
¡û
>W1610605681
LFSE01000067
Bacillota
Clostridiales bacterium DTU074 [LFSE]
96468
96544
+
Asp
GTC
[ENA]
¡û
>W1610605797
LFSH01000031
Bacillota
Clostridiales bacterium DTU070 [LFSH]
178
102
-
Asp
GTC
[ENA]
¡û
>W1610605934
LFSK01000046
Bacillota
Clostridiaceae bacterium DTU059 [LFSK]
5876
5952
+
Asp
GTC
[ENA]
¡û
>W1730010424
FRAJ01000043
Bacillota
Caminicella sporogenes DSM 14501 [FRAJ]
168
244
+
Asp
GTC
[ENA]
¡û
>W1710040891
BAZZ01000025
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum JCM 9324 [BAZZ]
20401
20477
+
Asp
GTC
[ENA]
¡û
>W1710589695
FRAJ01000013
Bacillota
Caminicella sporogenes DSM 14501 [FRAJ]
42667
42591
-
Asp
GTC
[ENA]
¡û
>W1710589712
FRAJ01000025
Bacillota
Caminicella sporogenes DSM 14501 [FRAJ]
24841
24917
+
Asp
GTC
[ENA]
¡û
>W1710589716
FRAJ01000026
Bacillota
Caminicella sporogenes DSM 14501 [FRAJ]
17622
17698
+
Asp
GTC
[ENA]
¡û
>W1710589722
FRAJ01000034
Bacillota
Caminicella sporogenes DSM 14501 [FRAJ]
4297
4373
+
Asp
GTC
[ENA]
¡û
>W1710726649
LFRV01000050
Bacillota
Clostridiales bacterium DTU069 [LFRV]
249
325
+
Asp
GTC
[ENA]
¡û
>W1710726945
LFSE01000029
Bacillota
Clostridiales bacterium DTU074 [LFSE]
3148
3072
-
Asp
GTC
[ENA]
¡û
>W1710726968
LFSE01000067
Bacillota
Clostridiales bacterium DTU074 [LFSE]
96468
96544
+
Asp
GTC
[ENA]
¡û
>W1710727084
LFSH01000031
Bacillota
Clostridiales bacterium DTU070 [LFSH]
178
102
-
Asp
GTC
[ENA]
¡û
>W1710727221
LFSK01000046
Bacillota
Clostridiaceae bacterium DTU059 [LFSK]
5876
5952
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK