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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178702 (75 seq.)
>W1710807305
LKCX01000012
Betaproteobacteria
Curvibacter sp. PAE-UM [LKCX]
50160
50084
-
Met
CAT
[ENA]
¡û
>W1711384863
MEDM01000013
Betaproteobacteria
Acidovorax sp. SCN 65-28 [MEDM]
1549
1625
+
Met
CAT
[ENA]
¡û
>W1711385126
MEDS01000025
Betaproteobacteria
Comamonas sp. SCN 65-56 [MEDS]
165576
165500
-
Met
CAT
[ENA]
¡û
>W1711386820
MEFU01000063
Betaproteobacteria
Comamonadaceae bacterium SCN 68-20 [MEFU]
2216
2140
-
Met
CAT
[ENA]
¡û
>W1711386826
MEFV01000002
Betaproteobacteria
Comamonas sp. SCN 67-35 [MEFV]
150144
150220
+
Met
CAT
[ENA]
¡û
>W1711409727
MGPC01000014
Betaproteobacteria
Curvibacter sp. GWA2_64_110 [MGPC]
84726
84650
-
Met
CAT
[ENA]
¡û
>W1711501324
MKRM01000091
Betaproteobacteria
Acidovorax sp. 65-7 [MKRM]
19885
19809
-
Met
CAT
[ENA]
¡û
>W1711502125
MKSJ01000117
Betaproteobacteria
Burkholderiales bacterium 66-5 [MKSJ]
277
201
-
Met
CAT
[ENA]
¡û
>W1711503044
MKTG01000072
Betaproteobacteria
Burkholderiales bacterium 68-10 [MKTG]
116923
116847
-
Met
CAT
[ENA]
¡û
>W1711680531
MRWK01000286
Betaproteobacteria
Comamonadaceae bacterium BIN2 [MRWK]
8185
8261
+
Met
CAT
[ENA]
¡û
>W131066635
ANOY01000539
Betaproteobacteria
Pseudacidovorax intermedius NH-1 [ANOY]
2257
2333
+
Met
CAT
[ENA]
¡û
>W131171408
ARGE01000035
Betaproteobacteria
Brachymonas chironomi DSM 19884 [ARGE]
164066
163990
-
Met
CAT
[ENA]
¡û
>C026311
CP000542
Betaproteobacteria
Verminephrobacter eiseniae EF01-2 [CP000542]
2609566
2609490
-
Met
CAT
[Ensembl]
¡û
>C171091622
CP019236
Betaproteobacteria
Rhodoferax koreense DCY-110 [CP019236]
513161
513237
+
Met
CAT
-
¡û
>WENV180025852
FTIQ01308409
[FTIQ] metagenome; soil
608
682
+
fMet
CAT
[ENA]
¢þ
>WENV180030662
FTJN01002311
[FTJN] metagenome; soil
3673
3748
+
fMet
CAT
[ENA]
¢þ
>WENV180030851
FTJN01184163
[FTJN] metagenome; soil
15
89
+
fMet
CAT
[ENA]
¢þ
>WENV180284582
OBID01064454
[OBID] metagenome; sludge
662
586
-
fMet
CAT
[ENA]
¢þ
>WENV180835248
ODKE01001573
[ODKE] human metagenome; G_DNA_Supragingival plaque
1545
1469
-
fMet
CAT
[ENA]
¢þ
>WENV180938520
ODTX01002615
[ODTX] human metagenome; G_DNA_Supragingival plaque
376
300
-
fMet
CAT
[ENA]
¢þ
>WENV180982986
ODVF01002149
[ODVF] human metagenome; G_DNA_Supragingival plaque
9062
9138
+
fMet
CAT
[ENA]
¢þ
>WENV181070334
OEAE01000905
[OEAE] human metagenome; G_DNA_Supragingival plaque
12526
12602
+
fMet
CAT
[ENA]
¢þ
>WENV181108171
OEEI01117667
[OEEI] human metagenome; G_DNA_Supragingival plaque
5
81
+
fMet
CAT
[ENA]
¢þ
>WENV181137809
OEGJ01030469
[OEGJ] human metagenome; G_DNA_Supragingival plaque
468
392
-
fMet
CAT
[ENA]
¢þ
>WENV181169261
OEIV010000968
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
8264
8340
+
fMet
CAT
[ENA]
¢þ
>WENV181179866
OEJT01022875
[OEJT] human metagenome; G_DNA_Supragingival plaque
1055
979
-
fMet
CAT
[ENA]
¢þ
>WENV181227214
OFDN01003393
[OFDN] hot springs metagenome; Water
851
927
+
fMet
CAT
[ENA]
¢þ
>WENV181311127
OFJB01000047
[OFJB] sludge metagenome; sludge
38020
38096
+
fMet
CAT
[ENA]
¢þ
>WENV181311284
OFJB01000560
[OFJB] sludge metagenome; sludge
17737
17661
-
fMet
CAT
[ENA]
¢þ
>WENV181311334
OFJB01000863
[OFJB] sludge metagenome; sludge
1
77
+
fMet
CAT
[ENA]
¢þ
>WENV181312389
OFJB01103973
[OFJB] sludge metagenome; sludge
477
553
+
fMet
CAT
[ENA]
¢þ
>WENV181361135
OFNH01000307
[OFNH] sediment metagenome; Lake sediment
471
395
-
fMet
CAT
[ENA]
¢þ
>WENV181363120
OFOS01000033
[OFOS] sediment metagenome; Lake sediment
26433
26357
-
fMet
CAT
[ENA]
¢þ
>WENV181364490
OFOW01000059
[OFOW] sediment metagenome; Lake sediment
9389
9465
+
fMet
CAT
[ENA]
¢þ
>WENV181364544
OFOY01000016
[OFOY] sediment metagenome; Lake sediment
40804
40728
-
fMet
CAT
[ENA]
¢þ
>WENV181364648
OFPA01000023
[OFPA] sediment metagenome; Lake sediment
40807
40731
-
fMet
CAT
[ENA]
¢þ
>WENV181364826
OFPE01000296
[OFPE] sediment metagenome; Lake sediment
2006
1930
-
fMet
CAT
[ENA]
¢þ
>WENV181365142
OFPK01000021
[OFPK] sediment metagenome; Lake sediment
20962
21038
+
fMet
CAT
[ENA]
¢þ
>WENV181365286
OFPN01000017
[OFPN] sediment metagenome; Lake sediment
29504
29580
+
fMet
CAT
[ENA]
¢þ
>WENV181365326
OFPO01000063
[OFPO] sediment metagenome; Lake sediment
8970
8894
-
fMet
CAT
[ENA]
¢þ
>WENV181365383
OFPQ01000004
[OFPQ] sediment metagenome; Lake sediment
3387
3463
+
fMet
CAT
[ENA]
¢þ
>WENV181401417
OFTX01000127
[OFTX] sludge metagenome; sludge
39460
39536
+
fMet
CAT
[ENA]
¢þ
>WENV181401565
OFTX01000990
[OFTX] sludge metagenome; sludge
408
484
+
fMet
CAT
[ENA]
¢þ
>WENV181402154
OFTY01000161
[OFTY] sludge metagenome; sludge
17683
17759
+
fMet
CAT
[ENA]
¢þ
>WENV181402720
OFTY01028024
[OFTY] sludge metagenome; sludge
36
112
+
fMet
CAT
[ENA]
¢þ
>WENV181416079
OGCL01047542
[OGCL] hot springs metagenome; Hot spring water
1125
1049
-
fMet
CAT
[ENA]
¢þ
>W141169054
AXVM01000004
Betaproteobacteria
Comamonas badia DSM 17552 [AXVM]
290449
290373
-
Met
CAT
[ENA]
¡û
>W141425993
JEMG01000001
Betaproteobacteria
Hylemonella gracilis str. Niagara R [JEMG]
3709179
3709103
-
Met
CAT
[ENA]
¡û
>WENV170691052
LFRM01377993
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
455
531
+
Met
CAT
[ENA]
¢þ
>C181158408
CP027666
Betaproteobacteria
Ottowia oryzae KADR8-3 [CP027666]
1255440
1255516
+
Met
CAT
-
¡û
>C181158495
CP027667
Betaproteobacteria
Melaminivora suipulveris SC2-9 [CP027667]
1482826
1482750
-
Met
CAT
-
¡û
>C181160003
CP027792
Betaproteobacteria
Pulveribacter suum SC2-7 [CP027792]
100729
100653
-
Met
CAT
-
¡û
>W141561781
JHYS01000016
Betaproteobacteria
Simplicispira psychrophila DSM 11588 [JHYS]
33452
33376
-
Met
CAT
[ENA]
¡û
>W09106032
AASQ01000003
Betaproteobacteria
Verminephrobacter eiseniae EF01-2 [AASQ]
12167
12091
-
Met
CAT
[ENA]
¡û
>C141003915
CP004885
Betaproteobacteria
Candidatus Symbiobacter mobilis CR [CP004885]
173846
173770
-
Met
CAT
[Ensembl]
¡û
>W1911244730
NSJB01000003
Betaproteobacteria
Vandammella animalimorsus NML00-0135 [NSJB]
89085
89009
-
Met
CAT
[ENA]
¡û
>W1911244765
NSJC01000002
Betaproteobacteria
Vandammella animalimorsus NML97-0112 [NSJC]
8984
8908
-
Met
CAT
[ENA]
¡û
>W1911244830
NSJD01000019
Betaproteobacteria
Vandammella animalimorsus NML79-0751 [NSJD]
28856
28932
+
Met
CAT
[ENA]
¡û
>W1911244885
NSJE01000023
Betaproteobacteria
Vandammella animalimorsus NML120219 [NSJE]
40159
40083
-
Met
CAT
[ENA]
¡û
>W1911270470
NTBH01000004
Betaproteobacteria
Vandammella animalimorsus NML91-0036 [NTBH]
8983
8907
-
Met
CAT
[ENA]
¡û
>W1911502762
OEQA01000002
Betaproteobacteria
Ottowia massiliensis Marseille-P4747 [OEQA]
734193
734117
-
Met
CAT
[ENA]
¡û
>W1810486301
QAXU01000006
Betaproteobacteria
Acidovorax sp. CF301 [QAXU]
140864
140940
+
Met
CAT
[ENA]
¡û
>W1810763080
QQAV01000001
Betaproteobacteria
Pseudacidovorax intermedius DSM 21352 [QQAV]
225945
225869
-
Met
CAT
[ENA]
¡û
>C151090601
CP012073
Betaproteobacteria
Ottowia sp. oral taxon 894 W10237 [CP012073]
1714231
1714307
+
Met
CAT
-
¡û
>W1510742443
CYIG01000049
Betaproteobacteria
Paenacidovorax caeni R-24608 [CYIG]
411
335
-
Met
CAT
[ENA]
¡û
>W1511596020
LBNQ01000025
Betaproteobacteria
Lampropedia cohaerens CT6 [LBNQ]
50504
50428
-
Met
CAT
[ENA]
¡û
>W121108925
ALEE01000608
Betaproteobacteria
Melaminivora alkalimesophila CRZ1 [ALEE]
863
787
-
Met
CAT
[ENA]
¡û
>W1610074352
BCWP01000010
Betaproteobacteria
Curvibacter delicatus NBRC 14919 [BCWP]
4290
4214
-
Met
CAT
[ENA]
¡û
>W1610591942
LDSL01000060
Betaproteobacteria
Pseudacidovorax intermedius [LDSL]
5777
5701
-
Met
CAT
[ENA]
¡û
>W1610671409
LKCX01000012
Betaproteobacteria
Curvibacter sp. PAE-UM [LKCX]
50160
50084
-
Met
CAT
[ENA]
¡û
>W1710071470
BCWP01000010
Betaproteobacteria
Curvibacter delicatus NBRC 14919 [BCWP]
4290
4214
-
Met
CAT
[ENA]
¡û
>W1710512075
FMZC01000011
Betaproteobacteria
Paracidovorax valerianellae [FMZC]
67219
67295
+
Met
CAT
[ENA]
¡û
>W1710522987
FNHP01000004
Betaproteobacteria
Oryzisolibacter propanilivorax EPL6 [FNHP]
309882
309806
-
Met
CAT
[ENA]
¡û
>W1710597084
FTMY01000005
Betaproteobacteria
Pseudacidovorax sp. RU35E [FTMY]
399155
399231
+
Met
CAT
[ENA]
¡û
>W1710711222
LDSL01000060
Betaproteobacteria
Pseudacidovorax intermedius [LDSL]
5777
5701
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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