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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180050 (26 seq.)
>W1711504007
MKUD01000045
Bacteroidota
Spirosoma sp. 48-14 [MKUD]
107184
107100
-
Leu
TAG
[ENA]
¡û
>W1711769467
MVEC01000016
Bacteroidota
Spirosoma sp. 209 [MVEC]
130271
130187
-
Leu
TAG
[ENA]
¡û
>C171030727
CP014263
Bacteroidota
Spirosoma montaniterrae DY10 [CP014263]
1430299
1430383
+
Leu
TAG
-
¡û
>C171037547
CP015317
Bacteroidota
Fibrella sp. ES10-3-2-2 [CP015317]
6011177
6011093
-
Leu
TAG
-
¡û
>C171104381
CP020104
Bacteroidota
Spirosoma aerolatum KACC 17939 [CP020104]
3024706
3024790
+
Leu
TAG
-
¡û
>C171104437
CP020105
Bacteroidota
Spirosoma rigui KCTC 12531 [CP020105]
3359159
3359243
+
Leu
TAG
-
¡û
>W131169805
ARFA01000010
Bacteroidota
Spirosoma panaciterrae DSM 21099 [ARFA]
102807
102723
-
Leu
TAG
[ENA]
¡û
>W131169911
ARFC01000028
Bacteroidota
Spirosoma luteum DSM 19990 [ARFC]
51052
51136
+
Leu
TAG
[ENA]
¡û
>W131169942
ARFD01000073
Bacteroidota
Spirosoma spitsbergense DSM 19989 [ARFD]
12887
12971
+
Leu
TAG
[ENA]
¡û
>W131181670
ARPG01000002
Bacteroidota
Rudanella lutea DSM 19387 [ARPG]
5609801
5609885
+
Leu
TAG
[ENA]
¡û
>W141242799
CAIT01000009
Bacteroidota
Fibrisoma limi BUZ 3 [CAIT]
382293
382209
-
Leu
TAG
[ENA]
¡û
>WENV170998718
MWWJ01087990
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
272
356
+
Leu
TAG
[ENA]
¢þ
>W09109902
ABUR01000001
Bacteroidota
Spirosoma linguale DSM 74 [ABUR]
373363
373445
+
Leu
TAG
[ENA]
¡û
>W1911497265
OCNH01000001
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
1549595
1549677
+
Leu
TAG
[ENA]
¡û
>W1911726812
QTJY01000016
Bacteroidota
Larkinella soli MIMbqt9 [QTJY]
58058
57976
-
Leu
TAG
[ENA]
¡û
>W1911766828
QXED01000011
Bacteroidota
Fibrisoma montanum HYT19 [QXED]
45448
45530
+
Leu
TAG
[ENA]
¡û
>W1810364375
PVTE01000010
Bacteroidota
Spirosoma oryzae DSM 28354 [PVTE]
209035
209117
+
Leu
TAG
[ENA]
¡û
>W1810692105
QLII01000001
Bacteroidota
Spirosoma telluris HMF3257 [QLII]
1775668
1775586
-
Leu
TAG
[ENA]
¡û
>W1810694563
QLMC01000004
Bacteroidota
Larkinella arboricola DSM 21851 [QLMC]
243522
243604
+
Leu
TAG
[ENA]
¡û
>W1810745151
QOWE01000030
Bacteroidota
Larkinella punicea zzj9 [QOWE]
100141
100057
-
Leu
TAG
[ENA]
¡û
>SRA1014545
SRR023845.192877
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
33
115
+
Leu
TAG
[SRA]
>SRA1015143
SRR023845.476809
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
171
87
-
Leu
TAG
[SRA]
>C151068607
CP010429
Bacteroidota
Spirosoma radiotolerans DG5A [CP010429]
2563590
2563674
+
Leu
TAG
[Ensembl]
¡û
>C10111758
CP001769
Bacteroidota
Spirosoma linguale DSM 74 [CP001769]
1942143
1942225
+
Leu
TAG
[Ensembl]
¡û
>C161104986
HE796683
Bacteroidota
Fibrella aestuarina BUZ 2 [HE796683]
5139158
5139074
-
Leu
TAG
[Ensembl]
¡û
>W1710558185
FOLQ01000002
Bacteroidota
Spirosoma endophyticum [FOLQ]
943840
943756
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK