This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.184120 (11 seq.)
>WENV180634412
OCRB01007219
[OCRB] metagenome; diffuse fluid
619
545
-
Arg
CCG
[ENA]
¡û
>WENV181208989
OFBD01001474
[OFBD] metagenome; hydrothermal vent
2280
2206
-
Arg
CCG
[ENA]
¡û
>WENV181210144
OFBG01006674
[OFBG] metagenome; hydrothermal vent
620
546
-
Arg
CCG
[ENA]
¡û
>WENV181210440
OFBH01003142
[OFBH] metagenome; hydrothermal vent
1144
1218
+
Arg
CCG
[ENA]
¡û
>WENV181211323
OFBK01001854
[OFBK] metagenome; hydrothermal vent
1261
1335
+
Arg
CCG
[ENA]
¡û
>WENV181211754
OFBL01005576
[OFBL] metagenome; hydrothermal vent
407
333
-
Arg
CCG
[ENA]
¡û
>WENV181212105
OFBM01010258
[OFBM] metagenome; hydrothermal vent
134
60
-
Arg
CCG
[ENA]
¡û
>WENV181224999
OFDH01000838
[OFDH] metagenome; hydrothermal vent
2519
2445
-
Arg
CCG
[ENA]
¡û
>WENV181226364
OFDL01000681
[OFDL] metagenome; hydrothermal vent
484
558
+
Arg
CCG
[ENA]
¡û
>WENV181228242
OFDO01005003
[OFDO] metagenome; hydrothermal vent
547
473
-
Arg
CCG
[ENA]
¡û
>WENV170666061
JYMV01032881
[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
2060
1987
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK