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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.190084 (25 seq.)
>W131099687
AOTL01000021
Gammaproteobacteria
Methylotuvimicrobium buryatense 5G [AOTL]
588888
588812
-
Arg
CCT
[ENA]
¡û
>WENV180282461
OBIC01000013
[OBIC] beach sand metagenome; beach sand
104536
104460
-
Arg
CCT
[ENA]
¢þ
>WENV180282689
OBIC01001364
[OBIC] beach sand metagenome; beach sand
2966
2892
-
Arg
CCT
[ENA]
¢þ
>WENV180293515
OBIY01000019
[OBIY] beach sand metagenome; beach sand
15226
15302
+
Arg
CCT
[ENA]
¢þ
>WENV180293624
OBIY01000266
[OBIY] beach sand metagenome; beach sand
2901
2975
+
Arg
CCT
[ENA]
¢þ
>WENV180296784
OBJA01002638
[OBJA] soil metagenome; sediment, water from around vicinity
220
296
+
Arg
CCT
[ENA]
¢þ
>WENV180296841
OBJA01003470
[OBJA] soil metagenome; sediment, water from around vicinity
567
491
-
Arg
CCT
[ENA]
¢þ
>WENV180352964
OBLQ010465785
[OBLQ] soil metagenome; soil
35
111
+
Arg
CCT
[ENA]
¢þ
>W08011060
ABSG01000003
Gammaproteobacteria
Nitrosococcus oceani C-27 [ABSG]
123936
123863
-
Arg
CCT
[ENA]
¡û
>WENV183682884
ORMF010500879
[ORMF] groundwater metagenome; groundwater
977
1053
+
Arg
CCT
[ENA]
¢þ
>WENV183725172
PJQE01183329
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
201
275
+
Arg
CCT
[ENA]
¢þ
>WENV170013105
ATLU01000015
[ATLU] bioreactor metagenome; continuous culture bioreactor inoculated with sediment procaryotes from the German
34278
34354
+
Arg
CCT
[ENA]
¢þ
>WENV170705586
LNAO01003117
[LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1119
1043
-
Arg
CCT
[ENA]
¢þ
>WENV170707236
LNAP01015808
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2714
2790
+
Arg
CCT
[ENA]
¢þ
>WENV170707277
LNAP01016595
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
17394
17470
+
Arg
CCT
[ENA]
¢þ
>C181000528
AP014836
Gammaproteobacteria
Candidatus Nitrosoglobus terrae TAO100 [AP014836]
545854
545778
-
Arg
CCT
-
¡û
>C191027191
CP024202
Gammaproteobacteria
Methylomicrobium sp. wino1 [CP024202]
4968698
4968774
+
Arg
CCT
-
¡û
>C191143434
CP035467
Gammaproteobacteria
Methylotuvimicrobium buryatense 5GB1C [CP035467]
3790738
3790814
+
Arg
CCT
-
¡û
>C191157617
CP038033
Gammaproteobacteria
Nitrosococcus wardiae D1FHS [CP038033]
360734
360810
+
Arg
CCT
-
¡û
>W141802306
JPFN01000029
Gammaproteobacteria
Nitrosococcus oceani [JPFN]
171887
171811
-
Arg
CCT
[ENA]
¡û
>W141803300
JPGN01000024
Gammaproteobacteria
Nitrosococcus oceani C-27 [JPGN]
15141
15065
-
Arg
CCT
[ENA]
¡û
>C10109800
CP001798
Gammaproteobacteria
Nitrosococcus halophilus Nc 4 [CP001798]
526302
526226
-
Arg
CCT
[Ensembl]
¡û
>C10109947
CP002086
Gammaproteobacteria
Nitrosococcus watsonii C-113 [CP002086]
764651
764575
-
Arg
CCT
[Ensembl]
¡û
>W1610047647
BBDL01000195
Gammaproteobacteria
Methylogaea oryzae JCM 16910 [BBDL]
4970
5046
+
Arg
CCT
[ENA]
¡û
>W1710044221
BBDL01000195
Gammaproteobacteria
Methylogaea oryzae JCM 16910 [BBDL]
4970
5046
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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