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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.190084 (5 seq.)
>WENV182547213
OJBS01000003
[OJBS] seawater metagenome; Sea water
327270
327346
+
fMet
CAT
[ENA]
¡û
>WENV182547214
OJBS01000003
[OJBS] seawater metagenome; Sea water
327525
327601
+
fMet
CAT
[ENA]
¡û
>WENV182568092
OJEP01030511
[OJEP] seawater metagenome; Sea water
377
301
-
fMet
CAT
[ENA]
¡û
>WENV182568093
OJEP01030511
[OJEP] seawater metagenome; Sea water
122
46
-
fMet
CAT
[ENA]
¡û
>WENV182585190
OJHH01003037
[OJHH] seawater metagenome; Sea water
170
246
+
fMet
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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