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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.190106 (5 seq.)
>WENV182547221
OJBS01000005
[OJBS] seawater metagenome; Sea water
213195
213119
-
Arg
CCG
[ENA]
¡û
>WENV182572687
OJFM01002832
[OJFM] seawater metagenome; Sea water
1238
1314
+
Arg
CCG
[ENA]
¡û
>WENV182585028
OJHH01000300
[OJHH] seawater metagenome; Sea water
7737
7661
-
Arg
CCG
[ENA]
¡û
>WENV182591186
OJIL01000442
[OJIL] seawater metagenome; Sea water
1992
1916
-
Arg
CCG
[ENA]
¡û
>WENV182593156
OJIT01001249
[OJIT] seawater metagenome; Sea water
3080
3004
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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