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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.19901 (126 seq.)
>W1710862652
LMEO01000008
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
141580
141489
-
Ser
GCT
[ENA]
¡û
>W1710862704
LMEO01000048
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
1003
912
-
Ser
GCT
[ENA]
¡û
>W1710879835
LMRY01000009
Bacillota
Paenibacillus sp. Soil724D2 [LMRY]
218725
218634
-
Ser
GCT
[ENA]
¡û
>W1710879888
LMRY01000057
Bacillota
Paenibacillus sp. Soil724D2 [LMRY]
1058
967
-
Ser
GCT
[ENA]
¡û
>W1710880106
LMSD01000004
Bacillota
Paenibacillus sp. Soil750 [LMSD]
274236
274145
-
Ser
GCT
[ENA]
¡û
>W1710880196
LMSD01000041
Bacillota
Paenibacillus sp. Soil750 [LMSD]
4283
4374
+
Ser
GCT
[ENA]
¡û
>W1710880464
LMSJ01000010
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
153854
153763
-
Ser
GCT
[ENA]
¡û
>W1710880524
LMSJ01000054
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
84971
84879
-
Ser
GCT
[ENA]
¡û
>W1710880787
LMSP01000013
Bacillota
Paenibacillus sp. Soil787 [LMSP]
202
293
+
Ser
GCT
[ENA]
¡û
>W1710885585
LMXH01000009
Bacillota
Paenibacillus sp. FJAT-26967 [LMXH]
67810
67901
+
Ser
GCT
[ENA]
¡û
>W1710921046
LNZF01000001
Bacillota
Paenibacillus polymyxa [LNZF]
540312
540402
+
Ser
GCT
[ENA]
¡û
>W1711009853
LQQX01000095
Bacillota
Paenibacillus jamilae [LQQX]
139
230
+
Ser
GCT
[ENA]
¡û
>W1711009858
LQQX01000122
Bacillota
Paenibacillus jamilae [LQQX]
116
207
+
Ser
GCT
[ENA]
¡û
>W131170189
ARFI01000006
Bacillota
Paenibacillus sp. HW567 [ARFI]
2887045
2886955
-
Ser
GCT
[ENA]
¡û
>W1711184764
LWMH01000002
Bacillota
Paenibacillus glucanolyticus [LWMH]
1482101
1482011
-
Ser
GCT
[ENA]
¡û
>W1711220508
LXQN01000007
Bacillota
Paenibacillus sp. AD87 [LXQN]
4408061
4407971
-
Ser
GCT
[ENA]
¡û
>W1711252512
LYPB01000050
Bacillota
Paenibacillus oryzisoli 1ZS3-15 [LYPB]
161467
161375
-
Ser
GCT
[ENA]
¡û
>W1711252523
LYPB01000054
Bacillota
Paenibacillus oryzisoli 1ZS3-15 [LYPB]
150
241
+
Ser
GCT
[ENA]
¡û
>W1711252625
LYPC01000012
Bacillota
Paenibacillus pectinilyticus [LYPC]
137
228
+
Ser
GCT
[ENA]
¡û
>W1711267558
LZCE01000042
Bacillota
Paenibacillus polymyxa [LZCE]
5660
5569
-
Ser
GCT
[ENA]
¡û
>W1711267576
LZCE01000045
Bacillota
Paenibacillus polymyxa [LZCE]
53014
52923
-
Ser
GCT
[ENA]
¡û
>W1711677139
MRTH01000025
Bacillota
Paenibacillus sp. FSL H7-0331 [MRTH]
437
349
-
Ser
GCT
[ENA]
¡û
>W1711677826
MRTT01000048
Bacillota
Paenibacillus glucanolyticus [MRTT]
34825
34915
+
Ser
GCT
[ENA]
¡û
>W1711710766
MSZX01000007
Bacillota
Paenibacillus selenitireducens [MSZX]
356559
356468
-
Ser
GCT
[ENA]
¡û
>W1711904567
MZNT01000039
Bacillota
Paenibacillus sp. 32352 [MZNT]
214
304
+
Ser
GCT
[ENA]
¡û
>C171030320
CP014167
Bacillota
Paenibacillus yonginensis DCY84 [CP014167]
4028016
4027925
-
Ser
GCT
-
¡û
>C171099965
CP019794
Bacillota
Paenibacillus larvae subsp. pulvifaciens ATCC 13537 [CP019794]
2656373
2656464
+
Ser
GCT
-
¡û
>C171104925
CP020327
Bacillota
Paenibacillus larvae subsp. pulvifaciens CCM 38 [CP020327]
2316623
2316714
+
Ser
GCT
-
¡û
>W131044615
AMQU01000020
Bacillota
Paenibacillus sp. ICGEB2008 [AMQU]
73900
73809
-
Ser
GCT
[ENA]
¡û
>W131044648
AMQU01000036
Bacillota
Paenibacillus sp. ICGEB2008 [AMQU]
822
913
+
Ser
GCT
[ENA]
¡û
>W131171962
ARGP01000028
Bacillota
Paenibacillus terrigena DSM 21567 [ARGP]
381
472
+
Ser
GCT
[ENA]
¡û
>W131229646
AUGY01000146
Bacillota
Paenibacillus alginolyticus DSM 5050 [AUGY]
9896
9805
-
Ser
GCT
[ENA]
¡û
>W141072387
ASPT01000035
Bacillota
Paenibacillus sp. FSL R5-808 [ASPT]
26332
26242
-
Ser
GCT
[ENA]
¡û
>W141233576
BAVZ01000005
Bacillota
Paenibacillus pini JCM 16418 [BAVZ]
233151
233241
+
Ser
GCT
[ENA]
¡û
>W141239639
CAES01000078
Bacillota
Paenibacillus senegalensis JC66 [CAES]
140516
140425
-
Ser
GCT
[ENA]
¡û
>ENV08001399
ABMY01005849
fish metagenome; microbial fraction from gut contents of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish were sick at time of sampling
12
103
+
Ser
GCT
[ENA]
¡û
>WENV170705884
LNAP01000568
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
40511
40420
-
Ser
GCT
[ENA]
¢þ
>C181038596
CP019655
Bacillota
Paenibacillus larvae subsp. larvae Eric_III [CP019655]
252014
252105
+
Ser
GCT
-
¡û
>C181038673
CP019659
Bacillota
Paenibacillus larvae subsp. larvae Eric_IV [CP019659]
252052
252143
+
Ser
GCT
-
¡û
>C181124383
CP025957
Bacillota
Paenibacillus polymyxa HY96-2 [CP025957]
183902
183993
+
Ser
GCT
-
¡û
>C181124395
CP025957
Bacillota
Paenibacillus polymyxa HY96-2 [CP025957]
407979
408070
+
Ser
GCT
-
¡û
>C181169806
CP028922
Bacillota
Paenibacillus sp. CAA11 [CP028922]
146234
146325
+
Ser
GCT
-
¡û
>C191183151
CP040829
Bacillota
Paenibacillus polymyxa ZF129 [CP040829]
1700579
1700488
-
Ser
GCT
-
¡û
>C191183163
CP040829
Bacillota
Paenibacillus polymyxa ZF129 [CP040829]
1441379
1441288
-
Ser
GCT
-
¡û
>W141564704
JIAZ01000015
Bacillota
Paenibacillus sp. URHA0014 [JIAZ]
473
565
+
Ser
GCT
[ENA]
¡û
>W141702814
JMLS01000026
Bacillota
Paenibacillus sp. UNC451MF [JMLS]
1
91
+
Ser
GCT
[ENA]
¡û
>W141726752
JNCB01000004
Bacillota
Paenibacillus polymyxa [JNCB]
55647
55556
-
Ser
GCT
[ENA]
¡û
>W141726770
JNCB01000008
Bacillota
Paenibacillus polymyxa [JNCB]
863512
863603
+
Ser
GCT
[ENA]
¡û
>W141726783
JNCB01000009
Bacillota
Paenibacillus polymyxa [JNCB]
113821
113912
+
Ser
GCT
[ENA]
¡û
>W1910154865
BIMC01000005
Bacillota
Paenibacillus glucanolyticus NBRC 15330 [BIMC]
47751
47661
-
Ser
GCT
[ENA]
¡û
>W1910155236
BIMK01000024
Bacillota
Paenibacillus chibensis NBRC 15958 [BIMK]
132213
132122
-
Ser
GCT
[ENA]
¡û
>W1910913851
NHRJ02000002
Bacillota
Paenibacillus xerothermodurans ATCC 27380 [NHRJ]
54335
54244
-
Ser
GCT
[ENA]
¡û
>W1910913903
NHRJ02000005
Bacillota
Paenibacillus xerothermodurans ATCC 27380 [NHRJ]
158236
158146
-
Ser
GCT
[ENA]
¡û
>W1910913925
NHRJ02000018
Bacillota
Paenibacillus xerothermodurans ATCC 27380 [NHRJ]
176
266
+
Ser
GCT
[ENA]
¡û
>W1911071680
NMQW01000001
Bacillota
Paenibacillus rigui JCM 16352 [NMQW]
137662
137572
-
Ser
GCT
[ENA]
¡û
>W1911071722
NMQW01000024
Bacillota
Paenibacillus rigui JCM 16352 [NMQW]
102363
102273
-
Ser
GCT
[ENA]
¡û
>SRA1001482
SRR001066.25149
Tilapia Farm, microbial fraction from gut contents of hybrid striped bass from Kent SeaTech (Salton Sea, CA); fish were sick at time of sampling (SRP000154)
12
103
+
Ser
GCT
[SRA]
>W1810225497
POVT01000010
Bacillota
Paenibacillus polymyxa KCCM 40454 [POVT]
39277
39186
-
Ser
GCT
[ENA]
¡û
>W1810225570
POVT01000033
Bacillota
Paenibacillus polymyxa KCCM 40454 [POVT]
5961
5870
-
Ser
GCT
[ENA]
¡û
>SRA1005926
SRR014589.53829
Metagenomic analysis of viruses in reclaimed water (SRP000673)
130
221
+
Ser
GCT
[SRA]
>SRA1005961
SRR014589.75143
Metagenomic analysis of viruses in reclaimed water (SRP000673)
113
204
+
Ser
GCT
[SRA]
>SRA1005970
SRR014589.82196
Metagenomic analysis of viruses in reclaimed water (SRP000673)
134
43
-
Ser
GCT
[SRA]
>SRA1005981
SRR014589.88914
Metagenomic analysis of viruses in reclaimed water (SRP000673)
272
181
-
Ser
GCT
[SRA]
>SRA1005990
SRR014589.91859
Metagenomic analysis of viruses in reclaimed water (SRP000673)
193
102
-
Ser
GCT
[SRA]
>SRA1006068
SRR014589.159752
Metagenomic analysis of viruses in reclaimed water (SRP000673)
135
44
-
Ser
GCT
[SRA]
>SRA1006075
SRR014589.168928
Metagenomic analysis of viruses in reclaimed water (SRP000673)
152
61
-
Ser
GCT
[SRA]
>SRA1006100
SRR014589.188561
Metagenomic analysis of viruses in reclaimed water (SRP000673)
24
115
+
Ser
GCT
[SRA]
>SRA1006105
SRR014589.195394
Metagenomic analysis of viruses in reclaimed water (SRP000673)
159
250
+
Ser
GCT
[SRA]
>W1810476631
QAOE01000005
Bacillota
Paenibacillus polymyxa KP10 [QAOE]
196
287
+
Ser
GCT
[ENA]
¡û
>W1810476668
QAOE01000063
Bacillota
Paenibacillus polymyxa KP10 [QAOE]
478
569
+
Ser
GCT
[ENA]
¡û
>W1810836271
QSRT01000035
Bacillota
Paenibacillus polymyxa TF07-21-d [QSRT]
254
345
+
Ser
GCT
[ENA]
¡û
>W1810836299
QSRT01000083
Bacillota
Paenibacillus polymyxa TF07-21-d [QSRT]
804
713
-
Ser
GCT
[ENA]
¡û
>W1810914533
QVPU01000020
Bacillota
Paenibacillus jamilae KACC 10925 [QVPU]
91804
91713
-
Ser
GCT
[ENA]
¡û
>W1810914581
QVPU01000039
Bacillota
Paenibacillus jamilae KACC 10925 [QVPU]
538
629
+
Ser
GCT
[ENA]
¡û
>C151013698
CP006872
Bacillota
Paenibacillus polymyxa SQR-21 SQR21 [CP006872]
183524
183615
+
Ser
GCT
[Ensembl]
¡û
>C151013710
CP006872
Bacillota
Paenibacillus polymyxa SQR-21 SQR21 [CP006872]
415313
415404
+
Ser
GCT
[Ensembl]
¡û
>C11117561
HE577054
Bacillota
Paenibacillus polymyxa M1 [HE577054]
1461715
1461805
+
Ser
GCT
[Ensembl]
¡û
>C11117670
CP002213
Bacillota
Paenibacillus polymyxa SC2 [CP002213]
1463115
1463205
+
Ser
GCT
[Ensembl]
¡û
>W11117689
ADHJ01000047
Bacillota
Paenibacillus vortex V453 [ADHJ]
25587
25497
-
Ser
GCT
[ENA]
¡û
>W1511401395
JTHO01000010
Bacillota
Paenibacillus polymyxa NRRL B-30509 [JTHO]
81
172
+
Ser
GCT
[ENA]
¡û
>W1511401456
JTHO01000044
Bacillota
Paenibacillus polymyxa NRRL B-30509 [JTHO]
599
690
+
Ser
GCT
[ENA]
¡û
>W1511433046
JUGY01000019
Bacillota
Paenibacillus chondroitinus OK414 [JUGY]
356
447
+
Ser
GCT
[ENA]
¡û
>W1511433110
JUGY01000095
Bacillota
Paenibacillus chondroitinus OK414 [JUGY]
668
759
+
Ser
GCT
[ENA]
¡û
>W1511480771
JWJJ01000006
Bacillota
Paenibacillus polymyxa A18 [JWJJ]
219045
218954
-
Ser
GCT
[ENA]
¡û
>W1511480813
JWJJ01000018
Bacillota
Paenibacillus polymyxa A18 [JWJJ]
588
679
+
Ser
GCT
[ENA]
¡û
>W11169740
AFOX01000004
Bacillota
Paenibacillus polymyxa ATCC 842 [AFOX]
98
189
+
Ser
GCT
[ENA]
¡û
>W11169786
AFOX01000034
Bacillota
Paenibacillus polymyxa ATCC 842 [AFOX]
203277
203186
-
Ser
GCT
[ENA]
¡û
>C161022583
CP009909
Bacillota
Paenibacillus polymyxa CF05 [CP009909]
3184543
3184634
+
Ser
GCT
[Ensembl]
¡û
>C161022595
CP009909
Bacillota
Paenibacillus polymyxa CF05 [CP009909]
3407437
3407528
+
Ser
GCT
[Ensembl]
¡û
>C161085786
CP015286
Bacillota
Paenibacillus glucanolyticus 5162 [CP015286]
875472
875382
-
Ser
GCT
-
¡û
>W1610043435
BAZT01000005
Bacillota
Paenibacillus pini JCM 16418 [BAZT]
233151
233241
+
Ser
GCT
[ENA]
¡û
>W1610049662
BBFE01000038
Bacillota
Paenibacillus sp. JCM 18996 [BBFE]
40294
40203
-
Ser
GCT
[ENA]
¡û
>W1610049698
BBFE01000074
Bacillota
Paenibacillus sp. JCM 18996 [BBFE]
6645
6735
+
Ser
GCT
[ENA]
¡û
>W1610501412
FLKE01000004
Bacillota
Paenibacillus tuaregi Marseille-P2472 [FLKE]
83595
83686
+
Ser
GCT
[ENA]
¡û
>W1610501423
FLKE01000008
Bacillota
Paenibacillus tuaregi Marseille-P2472 [FLKE]
276050
276141
+
Ser
GCT
[ENA]
¡û
>W1610724998
LMEO01000008
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
141580
141489
-
Ser
GCT
[ENA]
¡û
>W1610725050
LMEO01000048
Bacillota
Paenibacillus sp. Root444D2 [LMEO]
1003
912
-
Ser
GCT
[ENA]
¡û
>W1610742181
LMRY01000009
Bacillota
Paenibacillus sp. Soil724D2 [LMRY]
218725
218634
-
Ser
GCT
[ENA]
¡û
>W1610742234
LMRY01000057
Bacillota
Paenibacillus sp. Soil724D2 [LMRY]
1058
967
-
Ser
GCT
[ENA]
¡û
>W1610742452
LMSD01000004
Bacillota
Paenibacillus sp. Soil750 [LMSD]
274236
274145
-
Ser
GCT
[ENA]
¡û
>W1610742542
LMSD01000041
Bacillota
Paenibacillus sp. Soil750 [LMSD]
4283
4374
+
Ser
GCT
[ENA]
¡û
>W1610742810
LMSJ01000010
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
153854
153763
-
Ser
GCT
[ENA]
¡û
>W1610742870
LMSJ01000054
Bacillota
Paenibacillus sp. Soil766 [LMSJ]
84971
84879
-
Ser
GCT
[ENA]
¡û
>W1610743133
LMSP01000013
Bacillota
Paenibacillus sp. Soil787 [LMSP]
202
293
+
Ser
GCT
[ENA]
¡û
>W1610747511
LMXH01000009
Bacillota
Paenibacillus sp. FJAT-26967 [LMXH]
67810
67901
+
Ser
GCT
[ENA]
¡û
>W1610778944
LNZF01000001
Bacillota
Paenibacillus polymyxa [LNZF]
540312
540402
+
Ser
GCT
[ENA]
¡û
>W1610858373
LQQX01000095
Bacillota
Paenibacillus jamilae [LQQX]
139
230
+
Ser
GCT
[ENA]
¡û
>W1610858378
LQQX01000122
Bacillota
Paenibacillus jamilae [LQQX]
116
207
+
Ser
GCT
[ENA]
¡û
>W1610990501
LWMH01000002
Bacillota
Paenibacillus glucanolyticus [LWMH]
1482101
1482011
-
Ser
GCT
[ENA]
¡û
>W1611005026
LXQN01000007
Bacillota
Paenibacillus sp. AD87 [LXQN]
4408061
4407971
-
Ser
GCT
[ENA]
¡û
>W1611017300
LYPB01000050
Bacillota
Paenibacillus oryzisoli 1ZS3-15 [LYPB]
161467
161375
-
Ser
GCT
[ENA]
¡û
>W1611017311
LYPB01000054
Bacillota
Paenibacillus oryzisoli 1ZS3-15 [LYPB]
150
241
+
Ser
GCT
[ENA]
¡û
>W1611017413
LYPC01000012
Bacillota
Paenibacillus pectinilyticus [LYPC]
137
228
+
Ser
GCT
[ENA]
¡û
>W1611028751
LZCE01000042
Bacillota
Paenibacillus polymyxa [LZCE]
5660
5569
-
Ser
GCT
[ENA]
¡û
>W1611028769
LZCE01000045
Bacillota
Paenibacillus polymyxa [LZCE]
53014
52923
-
Ser
GCT
[ENA]
¡û
>W1710040595
BAZT01000005
Bacillota
Paenibacillus pini JCM 16418 [BAZT]
233151
233241
+
Ser
GCT
[ENA]
¡û
>W1710046061
BBFE01000038
Bacillota
Paenibacillus sp. JCM 18996 [BBFE]
40294
40203
-
Ser
GCT
[ENA]
¡û
>W1710046097
BBFE01000074
Bacillota
Paenibacillus sp. JCM 18996 [BBFE]
6645
6735
+
Ser
GCT
[ENA]
¡û
>W1710494882
FLKE01000004
Bacillota
Paenibacillus tuaregi Marseille-P2472 [FLKE]
83595
83686
+
Ser
GCT
[ENA]
¡û
>W1710494893
FLKE01000008
Bacillota
Paenibacillus tuaregi Marseille-P2472 [FLKE]
276050
276141
+
Ser
GCT
[ENA]
¡û
>W1710514841
FNBG01000016
Bacillota
Fontibacillus panacisegetis [FNBG]
74443
74533
+
Ser
GCT
[ENA]
¡û
>W1710523722
FNIF01000020
Bacillota
Paenibacillus sp. yr247 [FNIF]
65
156
+
Ser
GCT
[ENA]
¡û
>W1710535910
FNSW01000001
Bacillota
Paenibacillus sp. GP183 [FNSW]
3835163
3835254
+
Ser
GCT
[ENA]
¡û
>W1710542126
FNYX01000007
Bacillota
Paenibacillus polymyxa 181mfcol5.1 [FNYX]
218530
218439
-
Ser
GCT
[ENA]
¡û
>W1710567969
FOTE01000017
Bacillota
Paenibacillus sp. 1_12 [FOTE]
116127
116215
+
Ser
GCT
[ENA]
¡û
>W1710567978
FOTE01000022
Bacillota
Paenibacillus sp. 1_12 [FOTE]
354
444
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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