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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.199984 (5 seq.)
>WENV180060441
MPLX02169219
[MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter
1102
1026
-
Arg
TCG
[ENA]
¡û
>WENV180077724
MPMB02066374
[MPMB] marine metagenome; 300 m water sample filtered on 0.2 um supor filter
596
520
-
Arg
TCG
[ENA]
¡û
>WENV170336885
CETA01047746
[CETA] marine metagenome genome assembly TARA_109_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
385
309
-
Arg
TCG
[ENA]
¡û
>WENV170604549
FUWD010408020
[FUWD] metagenome; unknown
486
410
-
Arg
TCG
[ENA]
¡û
>WENV170615018
FUWD012846356
[FUWD] metagenome; unknown
264
340
+
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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