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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.2302 (71 seq.)
>W1711006857
LQOR01000037
Actinomycetota
Mycobacterium conspicuum [LQOR]
235230
235323
+
SeC(p)
TCA
[ENA]
¡û
>W1711007038
LQOV01000015
Actinomycetota
Mycobacterium florentinum [LQOV]
119852
119947
+
SeC(p)
TCA
[ENA]
¡û
>W1711007175
LQOY01000119
Actinomycetota
Mycobacterium gordonae [LQOY]
34076
33983
-
SeC(p)
TCA
[ENA]
¡û
>W1711008157
LQPT01000023
Actinomycetota
Mycobacterium sherrisii [LQPT]
45759
45854
+
SeC(p)
TCA
[ENA]
¡û
>W1711008420
LQPY01000042
Actinomycetota
Mycobacterium triplex [LQPY]
239296
239391
+
SeC(p)
TCA
[ENA]
¡û
>W1711008459
LQPZ01000027
Actinomycetota
Mycolicibacillus trivialis triviale [LQPZ]
16903
16998
+
SeC(p)
TCA
[ENA]
¡û
>W1711276748
LZIJ01000079
Actinomycetota
Mycobacterium sp. 852002-51163_SCH5372311 [LZIJ]
31444
31349
-
SeC(p)
TCA
[ENA]
¡û
>W1711279557
LZKQ01000279
Actinomycetota
Mycobacterium asiaticum [LZKQ]
26560
26655
+
SeC(p)
TCA
[ENA]
¡û
>W1711279628
LZKS01000107
Actinomycetota
Mycobacterium asiaticum [LZKS]
64659
64564
-
SeC(p)
TCA
[ENA]
¡û
>W1711280257
LZLF01000181
Actinomycetota
Mycobacterium asiaticum [LZLF]
6916
6821
-
SeC(p)
TCA
[ENA]
¡û
>W1711280425
LZLJ01000033
Actinomycetota
Mycobacterium sp. 1274756.6 [LZLJ]
18855
18950
+
SeC(p)
TCA
[ENA]
¡û
>W1711280494
LZLK01000196
Actinomycetota
Mycobacterium gordonae [LZLK]
56313
56220
-
SeC(p)
TCA
[ENA]
¡û
>W1711280599
LZLM01000115
Actinomycetota
Mycobacterium asiaticum [LZLM]
125947
125852
-
SeC(p)
TCA
[ENA]
¡û
>W1711280799
LZLQ01000142
Actinomycetota
Mycobacterium asiaticum [LZLQ]
3059
3152
+
SeC(p)
TCA
[ENA]
¡û
>W1711280821
LZLR01000107
Actinomycetota
Mycobacterium asiaticum [LZLR]
30242
30337
+
SeC(p)
TCA
[ENA]
¡û
>W1711280889
LZLS01000184
Actinomycetota
Mycobacterium asiaticum [LZLS]
47225
47132
-
SeC(p)
TCA
[ENA]
¡û
>W1711281087
LZLX01000059
Actinomycetota
Mycobacterium gordonae [LZLX]
11798
11891
+
SeC(p)
TCA
[ENA]
¡û
>W1711281598
LZMH01000085
Actinomycetota
Mycobacterium asiaticum [LZMH]
24467
24562
+
SeC(p)
TCA
[ENA]
¡û
>W1711285218
LZSC01000070
Actinomycetota
Mycobacterium sp. 1100029.7 [LZSC]
2202
2107
-
SeC(p)
TCA
[ENA]
¡û
>W1711285385
LZSG01000008
Actinomycetota
Mycobacterium sp. 1164966.3 [LZSG]
56838
56931
+
SeC(p)
TCA
[ENA]
¡û
>W1711286401
LZTB01000009
Actinomycetota
Mycobacterium sp. 852013-50091_SCH5140682 [LZTB]
85636
85541
-
SeC(p)
TCA
[ENA]
¡û
>W1711297398
MAEM01000522
Actinomycetota
Mycobacterium gordonae [MAEM]
735
828
+
SeC(p)
TCA
[ENA]
¡û
>W131252425
CBMJ020000209
Actinomycetota
Mycobacterium simiae ATCC 25275 = DSM 44165 [CBMJ]
40886
40981
+
SeC(p)
TCA
[ENA]
¡û
>W1711428288
MIHC01000007
Actinomycetota
Mycobacterium sherrisii [MIHC]
44805
44900
+
SeC(p)
TCA
[ENA]
¡û
>W1711428339
MIHD01000010
Actinomycetota
Mycolicibacillus koreensis triviale [MIHD]
107470
107565
+
SeC(p)
TCA
[ENA]
¡û
>W1711428511
MIHG01000341
Actinomycetota
Mycobacterium gordonae [MIHG]
1460
1367
-
SeC(p)
TCA
[ENA]
¡û
>W131186293
ARVZ01000001
Actinomycetota
Gordonia polyisoprenivorans HW436 [ARVZ]
455848
455754
-
SeC(p)
TCA
[ENA]
¡û
>W1711772257
MVHF01000006
Actinomycetota
Mycobacterium aquaticum RW6 [MVHF]
159804
159709
-
SeC(p)
TCA
[ENA]
¡û
>W1711772382
MVHI01000071
Actinomycetota
Mycobacterium asiaticum DSM 44297 [MVHI]
5112
5017
-
SeC(p)
TCA
[ENA]
¡û
>W1711784523
MVPX01000348
Actinomycetota
Gordonia sp. i37 [MVPX]
817
911
+
SeC(p)
TCA
[ENA]
¡û
>W1711920790
MZZM01000019
Actinomycetota
Mycobacterium simiae [MZZM]
37306
37211
-
SeC(p)
TCA
[ENA]
¡û
>W1711966703
NCXO01000019
Actinomycetota
Mycolicibacillus koreensis koreense [NCXO]
47435
47340
-
SeC(p)
TCA
[ENA]
¡û
>C171112452
CP020809
Actinomycetota
Mycobacterium dioxanotrophicus PH-06 [CP020809]
6490034
6489939
-
SeC(p)
TCA
-
¡û
>W141261450
CCAU010000002
Actinomycetota
Mycobacterium triplex [CCAU]
330372
330467
+
SeC(p)
TCA
[ENA]
¡û
>W141261958
CCBD010000070
Actinomycetota
Mycobacterium asiaticum DSM 44297 [CCBD]
145709
145614
-
SeC(p)
TCA
[ENA]
¡û
>WENV170650480
JRYE01001374
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
944
1039
+
SeC(p)
TCA
[ENA]
¢þ
>C181004651
AP018164
Actinomycetota
Mycobacterium shigaense JCM 32072 [AP018164]
150351
150446
+
SeC
TCA
-
¡û
>C191022824
CP022927
Actinomycetota
Mycobacterium shigaense SCY [CP022927]
149200
149295
+
Sec
TCA
-
¡û
>C191036418
CP025546
Actinomycetota
Mycobacterium paragordonae 49061 [CP025546]
230531
230625
+
Sec
TCA
-
¡û
>W1910005916
AYXK01000013
Actinomycetota
Mycobacterium tuberculosis OV254 [AYXK]
23644
23739
+
Sec
TCA
[ENA]
¡û
>W1910370905
FUEZ01000003
Actinomycetota
Mycobacterium numidiamassiliense AB215 [FUEZ]
1678949
1678854
-
Sec
TCA
[ENA]
¡û
>W1910471973
FXEG02000001
Actinomycetota
Mycobacterium ahvazicum AFP003 [FXEG]
98180
98275
+
Sec
TCA
[ENA]
¡û
>W1910826058
MWON01000011
Actinomycetota
Mycobacterium shigaense UN-152 [MWON]
676802
676897
+
Sec
TCA
[ENA]
¡û
>W1911076306
NMVK01000003
Actinomycetota
Enemella evansiae NML 150272 [NMVK]
32703
32608
-
Sec
TCA
[ENA]
¡û
>W1911076375
NMVL01000026
Actinomycetota
Enemella evansiae NML 140250 [NMVL]
137632
137727
+
Sec
TCA
[ENA]
¡û
>W1911076403
NMVM01000001
Actinomycetota
Enemella evansiae NML 090529 [NMVM]
1535305
1535210
-
Sec
TCA
[ENA]
¡û
>W1911076476
NMVN01000014
Actinomycetota
Enemella evansiae NML 061049 [NMVN]
51365
51270
-
Sec
TCA
[ENA]
¡û
>W1911076516
NMVO01000015
Actinomycetota
Enemella evansiae NML 030167 [NMVO]
79236
79141
-
Sec
TCA
[ENA]
¡û
>W1911076580
NMVP01000038
Actinomycetota
Enemella evansiae NML 020265 [NMVP]
174371
174466
+
Sec
TCA
[ENA]
¡û
>W1510562446
CTEE01000001
Actinomycetota
Mycobacterium lentiflavum CSUR P1491 [CTEE]
348821
348916
+
SeC
TCA
[ENA]
¡û
>C161030649
CP010996
Actinomycetota
Mycobacterium simiae [CP010996]
3261799
3261894
+
SeC(p)
TCA
[Ensembl]
¡û
>W121123917
BAEI01000077
Actinomycetota
Gordonia polyisoprenivorans NBRC 16320 [BAEI]
255952
255858
-
SeC
TCA
[ENA]
¡û
>W1610050723
BBGD01001091
Actinomycetota
Gordonia polyisoprenivorans NBRC 16320 = JCM 10675 [BBGD]
377
283
-
SeC(p)
TCA
[ENA]
¡û
>W121124423
BAFE01000051
Actinomycetota
Mobilicoccus pelagius NBRC 104925 [BAFE]
28484
28389
-
SeC
TCA
[ENA]
¡û
>W1611036033
LZIJ01000079
Actinomycetota
Mycobacterium sp. 852002-51163_SCH5372311 [LZIJ]
31444
31349
-
SeC(p)
TCA
[ENA]
¡û
>W1611038842
LZKQ01000279
Actinomycetota
Mycobacterium asiaticum [LZKQ]
26560
26655
+
SeC(p)
TCA
[ENA]
¡û
>W1611038913
LZKS01000107
Actinomycetota
Mycobacterium asiaticum [LZKS]
64659
64564
-
SeC(p)
TCA
[ENA]
¡û
>W1611039542
LZLF01000181
Actinomycetota
Mycobacterium asiaticum [LZLF]
6916
6821
-
SeC(p)
TCA
[ENA]
¡û
>W1611039710
LZLJ01000033
Actinomycetota
Mycobacterium sp. 1274756.6 [LZLJ]
18855
18950
+
SeC(p)
TCA
[ENA]
¡û
>W1611039779
LZLK01000196
Actinomycetota
Mycobacterium gordonae [LZLK]
56313
56220
-
SeC(p)
TCA
[ENA]
¡û
>W1611039884
LZLM01000115
Actinomycetota
Mycobacterium asiaticum [LZLM]
125947
125852
-
SeC(p)
TCA
[ENA]
¡û
>W1611040084
LZLQ01000142
Actinomycetota
Mycobacterium asiaticum [LZLQ]
3059
3152
+
SeC(p)
TCA
[ENA]
¡û
>W1611040106
LZLR01000107
Actinomycetota
Mycobacterium asiaticum [LZLR]
30242
30337
+
SeC(p)
TCA
[ENA]
¡û
>W1611040174
LZLS01000184
Actinomycetota
Mycobacterium asiaticum [LZLS]
47225
47132
-
SeC(p)
TCA
[ENA]
¡û
>W1611040372
LZLX01000059
Actinomycetota
Mycobacterium gordonae [LZLX]
11798
11891
+
SeC(p)
TCA
[ENA]
¡û
>W1611040883
LZMH01000085
Actinomycetota
Mycobacterium asiaticum [LZMH]
24467
24562
+
SeC(p)
TCA
[ENA]
¡û
>W1611042779
LZSC01000070
Actinomycetota
Mycobacterium sp. 1100029.7 [LZSC]
2202
2107
-
SeC(p)
TCA
[ENA]
¡û
>W1611042946
LZSG01000008
Actinomycetota
Mycobacterium sp. 1164966.3 [LZSG]
56838
56931
+
SeC(p)
TCA
[ENA]
¡û
>W1611043962
LZTB01000009
Actinomycetota
Mycobacterium sp. 852013-50091_SCH5140682 [LZTB]
85636
85541
-
SeC(p)
TCA
[ENA]
¡û
>W1611052281
MAEM01000522
Actinomycetota
Mycobacterium gordonae [MAEM]
735
828
+
SeC(p)
TCA
[ENA]
¡û
>W1710047122
BBGD01001091
Actinomycetota
Gordonia polyisoprenivorans NBRC 16320 = JCM 10675 [BBGD]
377
283
-
SeC(p)
TCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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