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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.259463 (132 seq.)
>W1710979371
LPNY01000209
Campylobacterota
Arcobacter sp. EP1 [LPNY]
177590
177515
-
Trp
CCA
[ENA]
¡û
>C171088966
CP019070
Campylobacterota
Poseidonibacter parvus LPB0137 [CP019070]
2365604
2365529
-
Trp
CCA
-
¡û
>WENV180043327
LQAH01028990
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
176
101
-
Trp
CCA
[ENA]
¡û
>WENV180247765
OBEQ010055307
[OBEQ] groundwater metagenome; groundwater
40173
40248
+
Trp
CCA
[ENA]
¡û
>WENV180283933
OBID01006806
[OBID] metagenome; sludge
1639
1564
-
Trp
CCA
[ENA]
¡û
>WENV180391260
OBPM01065202
[OBPM] marine metagenome; ENVO:00002010
275
350
+
Trp
CCA
[ENA]
¡û
>C08000275
CP000361
Campylobacterota
Aliarcobacter butzleri RM4018 [CP000361]
1896346
1896274
-
Trp
CCA
[Ensembl]
¡û
>WENV182555508
OJDB01000545
[OJDB] seawater metagenome; Sea water
175
100
-
Trp
CCA
[ENA]
¡û
>WENV182589149
OJHZ01000039
[OJHZ] seawater metagenome; Sea water
3332
3257
-
Trp
CCA
[ENA]
¡û
>WENV183702736
PDVJ01000005
[PDVJ] alkali sediment metagenome; glacial lake sediment
136
61
-
Trp
CCA
[ENA]
¡û
>WENV183714575
PDWI01192399
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
159
234
+
Trp
CCA
[ENA]
¡û
>WENV183715938
PDWI01275577
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
179
254
+
Trp
CCA
[ENA]
¡û
>WENV183721794
PDWJ01087079
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
144
219
+
Trp
CCA
[ENA]
¡û
>WENV170012686
ASRN01001057
[ASRN] bioreactor metagenome; day 82 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
3286
3211
-
Trp
CCA
[ENA]
¡û
>WENV170012758
ASRO01000084
[ASRO] bioreactor metagenome; day 119 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1783
1858
+
Trp
CCA
[ENA]
¡û
>WENV170012840
ASRP01000741
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1783
1858
+
Trp
CCA
[ENA]
¡û
>WENV170012945
ASRQ01000140
[ASRQ] bioreactor metagenome; day 168 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
1783
1858
+
Trp
CCA
[ENA]
¡û
>WENV170013023
ASRR01000188
[ASRR] bioreactor metagenome; day 185 samples from continuous culture bioreactor inoculated with sediment from the German Wadden
5601
5526
-
Trp
CCA
[ENA]
¡û
>WENV170014440
AYRG01000115
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
1783
1858
+
Trp
CCA
[ENA]
¡û
>WENV170635271
JDSF01000556
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
4660
4735
+
Trp
CCA
[ENA]
¡û
>WENV170640747
JFJP01024315
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
3334
3259
-
Trp
CCA
[ENA]
¡û
>WENV170654875
JRYL01057939
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
677
602
-
Trp
CCA
[ENA]
¡û
>WENV170655841
JTFN01082152
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
189
114
-
Trp
CCA
[ENA]
¡û
>WENV170657702
JTFP01011293
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
292
217
-
Trp
CCA
[ENA]
¡û
>WENV170704881
LLEN01009155
[LLEN] bioreactor metagenome; day86 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
238
313
+
Trp
CCA
[ENA]
¡û
>WENV170782972
MAAC01012278
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
3026
2951
-
Trp
CCA
[ENA]
¡û
>C181196931
CP031217
Campylobacterota
Halarcobacter bivalviorum LMG 26154 [CP031217]
365108
365183
+
Trp
CCA
-
¡û
>C181196988
CP031218
Campylobacterota
Malaciobacter halophilus CCUG 53805 [CP031218]
2274425
2274350
-
Trp
CCA
-
¡û
>C181197053
CP031219
Campylobacterota
Malaciobacter mytili LMG 24559 [CP031219]
2332152
2332077
-
Trp
CCA
-
¡û
>C181225272
LT906455
Campylobacterota
Aliarcobacter butzleri NCTC 12481 [LT906455]
1896339
1896264
-
Trp
CCA
-
¡û
>C191084442
CP032097
Campylobacterota
Arcobacter ellisii LMG 26155 [CP032097]
2415484
2415409
-
Trp
CCA
-
¡û
>C191084497
CP032098
Campylobacterota
Malaciobacter molluscorum LMG 25693 CECT 7696 [CP032098]
2309425
2309350
-
Trp
CCA
-
¡û
>C191084598
CP032100
Campylobacterota
Arcobacter suis CECT 7833 [CP032100]
2242655
2242580
-
Trp
CCA
-
¡û
>C191147192
CP035928
Campylobacterota
Malaciobacter pacificus LMG 26638 [CP035928]
2132984
2132909
-
Trp
CCA
-
¡û
>C191178292
CP040507
Campylobacterota
Aliarcobacter butzleri JV22 [CP040507]
1850043
1849968
-
Trp
CCA
-
¡û
>W141814473
JQGL01000015
Campylobacterota
Sulfuricurvum sp. MLSB [JQGL]
24716
24641
-
Trp
CCA
[ENA]
¡û
>C141005653
CP006615
Campylobacterota
Aliarcobacter butzleri 7h1h [CP006615]
1771373
1771298
-
Trp
CCA
[Ensembl]
¡û
>W1911200226
NREO01000010
Campylobacterota
Arcobacter suis CECT7833 [NREO]
19215
19290
+
Trp
CCA
[ENA]
¡û
>W1911200288
NREP01000011
Campylobacterota
Arcobacter venerupis CECT7836 [NREP]
126688
126613
-
Trp
CCA
[ENA]
¡û
>W1911424192
NXFY01000025
Campylobacterota
Arcobacter molluscorum CECT 7696 F98-3 [NXFY]
17176
17101
-
Trp
CCA
[ENA]
¡û
>W1911426277
NXIF01000031
Campylobacterota
Arcobacter halophilus DSM 18005 [NXIF]
20486
20561
+
Trp
CCA
[ENA]
¡û
>W1911426347
NXIG01000016
Campylobacterota
Arcobacter ellisii CECT 7837 [NXIG]
35968
35893
-
Trp
CCA
[ENA]
¡û
>W1911426403
NXIH01000022
Campylobacterota
Arcobacter defluvii CECT 7697 [NXIH]
13064
12989
-
Trp
CCA
[ENA]
¡û
>W1911426432
NXII01000007
Campylobacterota
Arcobacter cloacae CECT 7834 [NXII]
116020
115945
-
Trp
CCA
[ENA]
¡û
>W1911426475
NXIJ01000019
Campylobacterota
Arcobacter aquimarinus CECT 8442 [NXIJ]
37814
37739
-
Trp
CCA
[ENA]
¡û
>W1911576155
PDJU01000007
Campylobacterota
Arcobacter sp. F155 [PDJU]
153136
153061
-
Trp
CCA
[ENA]
¡û
>W1911576249
PDJW01000016
Campylobacterota
Arcobacter mytili T234 [PDJW]
29092
29017
-
Trp
CCA
[ENA]
¡û
>W1911576289
PDJX01000004
Campylobacterota
Arcobacter molluscorum F91 [PDJX]
168218
168143
-
Trp
CCA
[ENA]
¡û
>W1911576589
PDKE01000008
Campylobacterota
Arcobacter sp. CECT 8989 [PDKE]
132155
132080
-
Trp
CCA
[ENA]
¡û
>W1911576660
PDKG01000003
Campylobacterota
Arcobacter sp. CECT 8986 [PDKG]
278786
278711
-
Trp
CCA
[ENA]
¡û
>W1911576881
PDKL01000006
Campylobacterota
Arcobacter bivalviorum F118-4 [PDKL]
169342
169267
-
Trp
CCA
[ENA]
¡û
>W1911576925
PDKM01000006
Campylobacterota
Arcobacter bivalviorum CECT 7835 [PDKM]
160593
160518
-
Trp
CCA
[ENA]
¡û
>W1911746064
QVQX01000017
Campylobacterota
Arcobacter butzleri 17-1168 [QVQX]
13327
13252
-
Trp
CCA
[ENA]
¡û
>W1911775194
QXMK01000014
Campylobacterota
Arcobacter butzleri 55 [QXMK]
13316
13241
-
Trp
CCA
[ENA]
¡û
>W1911775386
QXNB01000019
Campylobacterota
Arcobacter butzleri 6V [QXNB]
18036
18111
+
Trp
CCA
[ENA]
¡û
>W2010282390
CABMIP010000018
Campylobacterota
Arcobacter butzleri [CABMIP]
13823
13748
-
Trp
CCA
[ENA]
¡û
>W2010305845
CABVQV010000020
Campylobacterota
Arcobacter butzleri [CABVQV]
13309
13234
-
Trp
CCA
[ENA]
¡û
>W2010305949
CABVQX010000019
Campylobacterota
Arcobacter butzleri [CABVQX]
18036
18111
+
Trp
CCA
[ENA]
¡û
>W2010305982
CABVQY010000026
Campylobacterota
Arcobacter butzleri [CABVQY]
18086
18161
+
Trp
CCA
[ENA]
¡û
>W2010306024
CABVQZ010000022
Campylobacterota
Arcobacter butzleri [CABVQZ]
13278
13203
-
Trp
CCA
[ENA]
¡û
>W2010306077
CABVRA010000020
Campylobacterota
Arcobacter butzleri [CABVRA]
18581
18656
+
Trp
CCA
[ENA]
¡û
>W2010306109
CABVRB010000024
Campylobacterota
Arcobacter butzleri [CABVRB]
18494
18569
+
Trp
CCA
[ENA]
¡û
>W2010306172
CABVRC010000025
Campylobacterota
Arcobacter butzleri [CABVRC]
13309
13234
-
Trp
CCA
[ENA]
¡û
>W2010306216
CABVRD010000024
Campylobacterota
Arcobacter butzleri [CABVRD]
18035
18110
+
Trp
CCA
[ENA]
¡û
>W2010306248
CABVRE010000027
Campylobacterota
Arcobacter butzleri [CABVRE]
13278
13203
-
Trp
CCA
[ENA]
¡û
>W2010306299
CABVRF010000016
Campylobacterota
Arcobacter butzleri [CABVRF]
18160
18235
+
Trp
CCA
[ENA]
¡û
>W2010306342
CABVRG010000010
Campylobacterota
Arcobacter butzleri [CABVRG]
69692
69617
-
Trp
CCA
[ENA]
¡û
>W2010306388
CABVRI010000021
Campylobacterota
Arcobacter butzleri [CABVRI]
13294
13219
-
Trp
CCA
[ENA]
¡û
>W2010306435
CABVRJ010000021
Campylobacterota
Arcobacter butzleri [CABVRJ]
18035
18110
+
Trp
CCA
[ENA]
¡û
>W2010306482
CABVRK010000021
Campylobacterota
Arcobacter butzleri [CABVRK]
14321
14246
-
Trp
CCA
[ENA]
¡û
>W2010306522
CABVRL010000015
Campylobacterota
Arcobacter butzleri [CABVRL]
18930
18855
-
Trp
CCA
[ENA]
¡û
>W2010306580
CABVRM010000021
Campylobacterota
Arcobacter butzleri [CABVRM]
13294
13219
-
Trp
CCA
[ENA]
¡û
>W2010306631
CABVRN010000027
Campylobacterota
Arcobacter butzleri [CABVRN]
18445
18520
+
Trp
CCA
[ENA]
¡û
>W2010306684
CABVRU010000135
Campylobacterota
Arcobacter butzleri [CABVRU]
3933
3858
-
Trp
CCA
[ENA]
¡û
>W2010306705
CABVRY010000015
Campylobacterota
Arcobacter butzleri [CABVRY]
18552
18627
+
Trp
CCA
[ENA]
¡û
>W2010306746
CABVSN010000017
Campylobacterota
Arcobacter butzleri [CABVSN]
18017
18092
+
Trp
CCA
[ENA]
¡û
>W2010306800
CABVSS010000015
Campylobacterota
Arcobacter butzleri [CABVSS]
39561
39486
-
Trp
CCA
[ENA]
¡û
>W2010641452
JABWGL010000028
Campylobacterota
Arcobacter butzleri RMIII [JABWGL]
13328
13253
-
Trp
CCA
[ENA]
¡û
>W2010641498
JABWGM010000026
Campylobacterota
Arcobacter butzleri RMI [JABWGM]
13328
13253
-
Trp
CCA
[ENA]
¡û
>W2011048442
NREO01000010
Campylobacterota
Arcobacter suis CECT7833 [NREO]
19215
19290
+
Trp
CCA
[ENA]
¡û
>W2011048504
NREP01000011
Campylobacterota
Arcobacter venerupis CECT7836 [NREP]
126688
126613
-
Trp
CCA
[ENA]
¡û
>W2011143962
NXFY01000025
Campylobacterota
Arcobacter molluscorum CECT 7696 F98-3 [NXFY]
17176
17101
-
Trp
CCA
[ENA]
¡û
>W2011145039
NXID01000009
Campylobacterota
Arcobacter mytili LMG 24559 CECT 7386 [NXID]
34197
34122
-
Trp
CCA
[ENA]
¡û
>W2011145135
NXIF01000031
Campylobacterota
Arcobacter halophilus DSM 18005 [NXIF]
20486
20561
+
Trp
CCA
[ENA]
¡û
>W2011145205
NXIG01000016
Campylobacterota
Arcobacter ellisii CECT 7837 [NXIG]
35968
35893
-
Trp
CCA
[ENA]
¡û
>W2011145261
NXIH01000022
Campylobacterota
Arcobacter defluvii CECT 7697 [NXIH]
13064
12989
-
Trp
CCA
[ENA]
¡û
>W2011145290
NXII01000007
Campylobacterota
Arcobacter cloacae CECT 7834 [NXII]
116020
115945
-
Trp
CCA
[ENA]
¡û
>W2011145333
NXIJ01000019
Campylobacterota
Arcobacter aquimarinus CECT 8442 [NXIJ]
37814
37739
-
Trp
CCA
[ENA]
¡û
>W2011185969
PDJU01000007
Campylobacterota
Arcobacter sp. F155 [PDJU]
153136
153061
-
Trp
CCA
[ENA]
¡û
>W2011186063
PDJW01000016
Campylobacterota
Arcobacter mytili T234 [PDJW]
29092
29017
-
Trp
CCA
[ENA]
¡û
>W2011186103
PDJX01000004
Campylobacterota
Arcobacter molluscorum F91 [PDJX]
168218
168143
-
Trp
CCA
[ENA]
¡û
>W2011186403
PDKE01000008
Campylobacterota
Arcobacter sp. CECT 8989 [PDKE]
132155
132080
-
Trp
CCA
[ENA]
¡û
>W2011186474
PDKG01000003
Campylobacterota
Arcobacter sp. CECT 8986 [PDKG]
278786
278711
-
Trp
CCA
[ENA]
¡û
>W2011186695
PDKL01000006
Campylobacterota
Arcobacter bivalviorum F118-4 [PDKL]
169342
169267
-
Trp
CCA
[ENA]
¡û
>W2011186739
PDKM01000006
Campylobacterota
Arcobacter bivalviorum CECT 7835 [PDKM]
160593
160518
-
Trp
CCA
[ENA]
¡û
>W2011309370
QVQX01000017
Campylobacterota
Arcobacter butzleri 17-1168 [QVQX]
13327
13252
-
Trp
CCA
[ENA]
¡û
>W2011328751
QXMK01000014
Campylobacterota
Arcobacter butzleri 55 [QXMK]
13316
13241
-
Trp
CCA
[ENA]
¡û
>W2011328984
QXNB01000019
Campylobacterota
Arcobacter butzleri 6V [QXNB]
18036
18111
+
Trp
CCA
[ENA]
¡û
>W2011404007
RCWF01000007
Campylobacterota
Arcobacter sp. SM1702 [RCWF]
18061
18136
+
Trp
CCA
[ENA]
¡û
>W2012241216
WCIX01000029
Campylobacterota
Arcobacter butzleri 16CS0817-2 [WCIX]
13328
13253
-
Trp
CCA
[ENA]
¡û
>W2012241261
WCIY01000015
Campylobacterota
Arcobacter butzleri 16CS0821-2 [WCIY]
18490
18565
+
Trp
CCA
[ENA]
¡û
>W2012324549
WFKI01000012
Campylobacterota
Poseidonibacter sp. JOD-M-6 [WFKI]
19205
19280
+
Trp
CCA
[ENA]
¡û
>W2012324591
WFKJ01000036
Campylobacterota
Poseidonibacter sp. SJOD-M-5 [WFKJ]
12645
12570
-
Trp
CCA
[ENA]
¡û
>W2012324626
WFKK01000019
Campylobacterota
Poseidonibacter sp. SJOD-M-33 [WFKK]
32949
32874
-
Trp
CCA
[ENA]
¡û
>W2110021102
BMEF01000025
Campylobacterota
Arcobacter pacificus CGMCC 1.11011 [BMEF]
19412
19487
+
Trp
CCA
[ENA]
¡û
>W2110037133
BMQR01000011
Campylobacterota
Arcobacter butzleri JCM 31724 [BMQR]
18034
18109
+
Trp
CCA
[ENA]
¡û
>W2110612951
JAHKQT010000032
Campylobacterota
Poseidonibacter lekithochrous A1R12 [JAHKQT]
34276
34351
+
Trp
CCA
[ENA]
¡û
>C201096504
CP041386
Campylobacterota
Arcobacter butzleri ED-1 [CP041386]
1724567
1724492
-
Trp
CCA
-
¡û
>W2110762181
QYZU01000021
Campylobacterota
Aliarcobacter butzleri 34_O [QYZU]
18041
18116
+
Trp
CCA
[ENA]
¡û
>W2110762227
QYZV01000012
Campylobacterota
Aliarcobacter butzleri 39_O [QYZV]
30547
30472
-
Trp
CCA
[ENA]
¡û
>C231428898
CP100595
Campylobacterota
Arcobacter sp. ARW1-2F2 [CP100595]
2611018
2610943
-
Trp
CCA
-
¡û
>C231489131
CP104332
Campylobacterota
Aliarcobacter butzleri P1200 [CP104332]
1686839
1686764
-
Trp
CCA
-
¡û
>C231490416
CP104378
Campylobacterota
Aliarcobacter butzleri P1100 [CP104378]
1848653
1848578
-
Trp
CCA
-
¡û
>C241034725
CP030944
Campylobacterota
Arcobacter aquimarinus W63 [CP030944]
2137017
2136942
-
Trp
CCA
-
¡û
>C241068394
CP042652
Campylobacterota
Arcobacter acticola KCTC 52212 [CP042652]
2517352
2517277
-
Trp
CCA
-
¡û
>C241161488
CP053833
Campylobacterota
Arcobacter cloacae LMG 26153 [CP053833]
2262266
2262191
-
Trp
CCA
-
¡û
>C241161547
CP053835
Campylobacterota
Arcobacter defluvii LMG 25694 [CP053835]
2605863
2605788
-
Trp
CCA
-
¡û
>C241161744
CP053840
Campylobacterota
Arcobacter venerupis LMG 26156 [CP053840]
2679430
2679355
-
Trp
CCA
-
¡û
>C11100396
AP012047
Campylobacterota
Aliarcobacter butzleri ED-1 [AP012047]
1774452
1774377
-
Trp
CCA
[Ensembl]
¡û
>C11101062
AP012048
Campylobacterota
Arcobacter sp. L [AP012048]
2562927
2562852
-
Trp
CCA
[Ensembl]
¡û
>W1510762845
JAIQ01000129
Campylobacterota
Aliarcobacter butzleri L348 [JAIQ]
1719
1794
+
Trp
CCA
[ENA]
¡û
>W1510762856
JAIR01000026
Campylobacterota
Aliarcobacter butzleri L349 [JAIR]
19579
19504
-
Trp
CCA
[ENA]
¡û
>W1510762907
JAIS01000069
Campylobacterota
Aliarcobacter butzleri L351 [JAIS]
1720
1795
+
Trp
CCA
[ENA]
¡û
>W1510762929
JAIT01000018
Campylobacterota
Aliarcobacter butzleri L352 [JAIT]
13823
13748
-
Trp
CCA
[ENA]
¡û
>W1510762956
JAIU01000016
Campylobacterota
Aliarcobacter butzleri L353 [JAIU]
13823
13748
-
Trp
CCA
[ENA]
¡û
>W1510762992
JAIV01000061
Campylobacterota
Aliarcobacter butzleri L354 [JAIV]
17309
17234
-
Trp
CCA
[ENA]
¡û
>W1510763014
JAIW01000018
Campylobacterota
Aliarcobacter butzleri L355 [JAIW]
13823
13748
-
Trp
CCA
[ENA]
¡û
>W1510763061
JAIX01000064
Campylobacterota
Aliarcobacter butzleri L350 [JAIX]
1720
1795
+
Trp
CCA
[ENA]
¡û
>W11143302
AEPT01000030
Campylobacterota
Aliarcobacter butzleri JV22 [AEPT]
16227
16152
-
Trp
CCA
[ENA]
¡û
>W11167780
AFNL01000071
Campylobacterota
Aliarcobacter butzleri 7h1h [AFNL]
13498
13423
-
Trp
CCA
[ENA]
¡û
>W1610835362
LPNY01000209
Campylobacterota
Arcobacter sp. EP1 [LPNY]
177590
177515
-
Trp
CCA
[ENA]
¡û
>W1710082879
BDIR01000017
Campylobacterota
Arcobacter sp. LA11 [BDIR]
13994
13919
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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