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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.268566 (42 seq.)
>C171064236
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
1710673
1710748
+
Gln
TTG
-
¡û
>C171064257
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2591166
2591241
+
Gln
TTG
-
¡û
>C171064284
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2619245
2619320
+
Gln
TTG
-
¡û
>C171064323
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
709316
709241
-
Gln
TTG
-
¡û
>C171064353
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
695102
695027
-
Gln
TTG
-
¡û
>C171109183
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
516499
516574
+
Gln
TTG
-
¡û
>C171109204
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1396992
1397067
+
Gln
TTG
-
¡û
>C171109231
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1425070
1425145
+
Gln
TTG
-
¡û
>C171109265
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4101868
4101793
-
Gln
TTG
-
¡û
>C171109295
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4087654
4087579
-
Gln
TTG
-
¡û
>C000788
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
997036
997111
+
Gln
TTG
[Ensembl]
¡û
>C000818
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4452858
4452783
-
Gln
TTG
[Ensembl]
¡û
>C000852
CP000724
Bacillota
Alkaliphilus metalliredigens QYMF [CP000724]
4437472
4437397
-
Gln
TTG
[Ensembl]
¡û
>w010475
AAKU01000254
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
676
599
-
Gln
TTG
[ENA]
¡û
>w010464
AAKU01000216
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
349
426
+
Gln
TTG
[ENA]
¡û
>w010446
AAKU01000209
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
1519
1596
+
Gln
TTG
[ENA]
¡û
>w010411
AAKU01000062
Bacillota
Alkaliphilus metalliredigens QYMF [AAKU]
12832
12755
-
Gln
TTG
[ENA]
¡û
>WENV180567652
OCLL01148313
[OCLL] human gut metagenome; human gut
129
54
-
Gln
TTG
[ENA]
¢þ
>WENV170675111
LCWZ01007145
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
287
362
+
Gln
TTG
[ENA]
¢þ
>WENV170675246
LCWZ01020823
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
372
297
-
Gln
TTG
[ENA]
¢þ
>WENV170675300
LCWZ01035280
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
121
46
-
Gln
TTG
[ENA]
¢þ
>W141561137
JHYF01000002
Bacillota
Alkaliphilus transvaalensis ATCC 700919 [JHYF]
2
77
+
Gln
TTG
[ENA]
¡û
>W141561156
JHYF01000003
Bacillota
Alkaliphilus transvaalensis ATCC 700919 [JHYF]
2
77
+
Gln
TTG
[ENA]
¡û
>W141561170
JHYF01000010
Bacillota
Alkaliphilus transvaalensis ATCC 700919 [JHYF]
89824
89749
-
Gln
TTG
[ENA]
¡û
>W1910548228
FZOJ01000008
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
185881
185806
-
Gln
TTG
[ENA]
¡û
>W1910548249
FZOJ01000018
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
39693
39618
-
Gln
TTG
[ENA]
¡û
>W1910548275
FZOJ01000089
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
812
887
+
Gln
TTG
[ENA]
¡û
>C151057215
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
502048
502123
+
Gln
TTG
[Ensembl]
¡û
>C151057236
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
1167717
1167792
+
Gln
TTG
[Ensembl]
¡û
>C151057251
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
1179186
1179261
+
Gln
TTG
[Ensembl]
¡û
>W1511527517
JYHU01000002
Bacillota
Clostridium aceticum DSM 1496 [JYHU]
298936
298861
-
Gln
TTG
[ENA]
¡û
>W1511527552
JYHU01000040
Bacillota
Clostridium aceticum DSM 1496 [JYHU]
323
248
-
Gln
TTG
[ENA]
¡û
>W1710506665
FMUS01000003
Bacillota
Alkaliphilus peptidifermentans DSM 18978 [FMUS]
679
754
+
Gln
TTG
[ENA]
¡û
>W1710506695
FMUS01000039
Bacillota
Alkaliphilus peptidifermentans DSM 18978 [FMUS]
22631
22556
-
Gln
TTG
[ENA]
¡û
>W1710506703
FMUS01000070
Bacillota
Alkaliphilus peptidifermentans DSM 18978 [FMUS]
951
876
-
Gln
TTG
[ENA]
¡û
>W1710520408
FNFP01000001
Bacillota
Natronincola ferrireducens [FNFP]
477143
477218
+
Gln
TTG
[ENA]
¡û
>W1710520426
FNFP01000002
Bacillota
Natronincola ferrireducens [FNFP]
549225
549150
-
Gln
TTG
[ENA]
¡û
>W1710531809
FNPV01000001
Bacillota
Tindallia californiensis [FNPV]
454108
454033
-
Gln
TTG
[ENA]
¡û
>W1710531824
FNPV01000002
Bacillota
Tindallia californiensis [FNPV]
387450
387375
-
Gln
TTG
[ENA]
¡û
>W1710553655
FOHU01000009
Bacillota
Natronincola peptidivorans [FOHU]
144718
144643
-
Gln
TTG
[ENA]
¡û
>W1710563827
FOQA01000001
Bacillota
Tindallia magadiensis [FOQA]
758973
758898
-
Gln
TTG
[ENA]
¡û
>W1710563847
FOQA01000006
Bacillota
Tindallia magadiensis [FOQA]
200977
200902
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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