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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.270859 (37 seq.)
>W131051977
AMYG01000036
Bacillota
Thermoanaerobacter thermohydrosulfuricus WC1 [AMYG]
19139
19064
-
Trp
CCA
[ENA]
¡û
>W131237134
AUMW01000003
Bacillota
Desulfotruncus alcoholivorax DSM 16058 [AUMW]
23629
23554
-
Trp
CCA
[ENA]
¡û
>C025832
AE008691
Bacillota
Caldanaerobacter subterraneus subsp. tengcongensis MB4 [AE008691]
1521836
1521911
+
Trp
CCA
[Ensembl]
¡û
>WENV180298866
OBJA01714894
[OBJA] soil metagenome; sediment, water from around vicinity
86
161
+
Trp
CCA
[ENA]
¡û
>W141067376
ASAA01000015
Bacillota
Acetivibrio clariflavus 4-2a [ASAA]
50503
50578
+
Trp
CCA
[ENA]
¡û
>W141153132
AXDC01000018
Bacillota
Caldanaerobacter subterraneus subsp. yonseiensis KB-1 [AXDC]
20134
20209
+
Trp
CCA
[ENA]
¡û
>C08011081
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
951882
951810
-
Trp
CCA
[Ensembl]
¡û
>W141276490
JADV01000020
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [JADV]
27044
26969
-
Trp
CCA
[ENA]
¡û
>WENV170008030
AMZC01000416
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
16323
16398
+
Trp
CCA
[ENA]
¡û
>WENV170561113
CZCA01003064
[CZCA] anaerobic digester metagenome; anaerobic digester
29207
29282
+
Trp
CCA
[ENA]
¡û
>WENV170561660
CZCA01019380
[CZCA] anaerobic digester metagenome; anaerobic digester
1377
1452
+
Trp
CCA
[ENA]
¡û
>WENV170561769
CZCB01000013
[CZCB] anaerobic digester metagenome; anaerobic digester
20384
20459
+
Trp
CCA
[ENA]
¡û
>WENV170676424
LDZR01002627
[LDZR] terrestrial metagenome; oil reservoir sample K2
5687
5612
-
Trp
CCA
[ENA]
¡û
>WENV170676425
LDZR01002627
[LDZR] terrestrial metagenome; oil reservoir sample K2
643
568
-
Trp
CCA
[ENA]
¡û
>WENV170683694
LFRM01000422
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
20231
20306
+
Trp
CCA
[ENA]
¡û
>WENV170686299
LFRM01138125
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1114
1189
+
Trp
CCA
[ENA]
¡û
>WENV170687420
LFRM01192231
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
4089
4014
-
Trp
CCA
[ENA]
¡û
>WENV170721147
LSQX01181012
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
35422
35497
+
Trp
CCA
[ENA]
¡û
>W09112145
ABXP01000116
Bacillota
Caldanaerobacter subterraneus DSM 12653 [ABXP]
24908
24983
+
Trp
CCA
[ENA]
¡û
>W09134148
ACQZ01000036
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [ACQZ]
11827
11902
+
Trp
CCA
[ENA]
¡û
>W09135076
ACVH01000071
Bacillota
Thermoanaerobacter italicus Ab9 [ACVH]
205
130
-
Trp
CCA
[ENA]
¡û
>W2010785559
LSRS01000005
Bacillota
Sporotomaculum syntrophicum FB [LSRS]
380821
380896
+
Trp
CCA
[ENA]
¡û
>W2011387339
RBWE01000001
Bacillota
Desulfofundulus sp. 435 [RBWE]
1898618
1898543
-
Trp
CCA
[ENA]
¡û
>W2011622307
SLWU01000021
Bacillota
Caldanaerobacter subterraneus DSM 13054 [SLWU]
43748
43823
+
Trp
CCA
[ENA]
¡û
>W2012042544
VISJ01000001
Bacillota
Hungateiclostridium clariflavum 4-2A [VISJ]
2922240
2922315
+
Trp
CCA
[ENA]
¡û
>W2012096656
VNHM01000001
Bacillota
Desulfallas thermosapovorans DSM 6562 [VNHM]
54882
54807
-
Trp
CCA
[ENA]
¡û
>W2110359197
JADNRQ010000009
Bacillota
Desulfallas sp. Bu1-1 [JADNRQ]
39373
39298
-
Trp
CCA
[ENA]
¡û
>W2110471142
JAFCAC010000044
Bacillota
Thermoanaerobacter sp. CM-CNRG TB177 [JAFCAC]
87400
87325
-
Trp
CCA
[ENA]
¡û
>C231539364
CP110888
Bacillota
Thermoanaerobacter sp. RKWS2 [CP110888]
1675322
1675397
+
Trp
CCA
-
¡û
>C10113389
CP001936
Bacillota
Thermoanaerobacter italicus Ab9 [CP001936]
1396166
1396241
+
Trp
CCA
[Ensembl]
¡û
>C11107093
CP002770
Bacillota
Desulfofundulus kuznetsovii DSM 6115 [CP002770]
1419730
1419805
+
Trp
CCA
[Ensembl]
¡û
>C11123240
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
1511017
1511092
+
Trp
CCA
[Ensembl]
¡û
>C121005079
CP003065
Bacillota
Acetivibrio clariflavus DSM 19732 [CP003065]
1684770
1684695
-
Trp
CCA
[Ensembl]
¡û
>W1610606367
LFSV01000002
Bacillota
Clostridiales bacterium DTU013 [LFSV]
20231
20306
+
Trp
CCA
[ENA]
¡û
>W1710560385
FONI01000044
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
13212
13137
-
Trp
CCA
[ENA]
¡û
>W1710574791
FOYM01000013
Bacillota
Desulfoscipio geothermicus geothermicum [FOYM]
46915
46990
+
Trp
CCA
[ENA]
¡û
>W1710727654
LFSV01000002
Bacillota
Clostridiales bacterium DTU013 [LFSV]
20231
20306
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK