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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.27317 (62 seq.)
>W1710885603
LMXH01000014
Bacillota
Paenibacillus sp. FJAT-26967 [LMXH]
50484
50396
-
Ser
TGA
[ENA]
¡û
>W1711010073
LQRA01000058
Bacillota
Paenibacillus elgii [LQRA]
161922
161833
-
Ser
TGA
[ENA]
¡û
>W1711391629
MELW01000320
Bacillota
Alicyclobacillus sp. RIFOXYA1_FULL_53_8 [MELW]
18573
18662
+
Ser
TGA
[ENA]
¡û
>W1711904520
MZNT01000017
Bacillota
Paenibacillus sp. 32352 [MZNT]
6561
6650
+
Ser
TGA
[ENA]
¡û
>W131236324
AUMH01000015
Bacillota
Alicyclobacillus herbarius DSM 13609 [AUMH]
95319
95230
-
Ser
TGA
[ENA]
¡û
>W131000523
AGEN01000033
Bacillota
Paenibacillus sp. HGH0039 [AGEN]
8903
8992
+
Ser
TGA
[ENA]
¡û
>W141237905
BBJT01000012
Bacillota
Paenibacillus chitinolyticus NBRC 15660 [BBJT]
182560
182471
-
Ser
TGA
[ENA]
¡û
>WENV170708199
LNAP01057805
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1250
1338
+
Ser
TGA
[ENA]
¡û
>W141462584
JFHX01000081
Bacillota
Paenibacillus ehimensis A2 [JFHX]
6079
6168
+
Ser
TGA
[ENA]
¡û
>C191044787
CP026520
Bacillota
Paenibacillus chitinolyticus KCCM 41400 [CP026520]
477465
477554
+
Ser
TGA
-
¡û
>W141730558
JNIL01000001
Bacillota
Alicyclobacillus macrosporangiidus CPP55 [JNIL]
3755335
3755424
+
Ser
TGA
[ENA]
¡û
>W141754314
JNVM01000011
Bacillota
Paenibacillus tyrfis MSt1 [JNVM]
6305
6394
+
Ser
TGA
[ENA]
¡û
>W1910154843
BIMB01000105
Bacillota
Paenibacillus elgii NBRC 100335 [BIMB]
123
34
-
Ser
TGA
[ENA]
¡û
>W1910155109
BIMH01000040
Bacillota
Paenibacillus validus NBRC 15382 [BIMH]
39745
39656
-
Ser
TGA
[ENA]
¡û
>W1910505718
FYEP01000017
Bacillota
Paenibacillus elgii B69 [FYEP]
6353
6442
+
Ser
TGA
[ENA]
¡û
>W1810402851
PYHP01000104
Bacillota
Paenibacillus elgii AC13 [PYHP]
173933
173844
-
Ser
TGA
[ENA]
¡û
>W2010087574
BILX01000059
Bacillota
Paenibacillus ehimensis NBRC 15659 [BILX]
4343
4432
+
Ser
TGA
[ENA]
¡û
>W2010087778
BIMB01000105
Bacillota
Paenibacillus elgii NBRC 100335 [BIMB]
123
34
-
Ser
TGA
[ENA]
¡û
>W2010088044
BIMH01000040
Bacillota
Paenibacillus validus NBRC 15382 [BIMH]
39745
39656
-
Ser
TGA
[ENA]
¡û
>W2010269462
CABKSB020000001
Bacillota
Paenibacillaceae bacterium [CABKSB]
3089744
3089833
+
Ser
TGA
[ENA]
¡û
>W2010425407
FYEP01000017
Bacillota
Paenibacillus elgii B69 [FYEP]
6353
6442
+
Ser
TGA
[ENA]
¡û
>W2010471292
JAAGWC010000073
Bacillota
Paenibacillus elgii LMG 24465 [JAAGWC]
61254
61165
-
Ser
TGA
[ENA]
¡û
>W2010488611
JAAIVH010000001
Bacillota
Paenibacillus elgii SWL-W8 [JAAIVH]
763894
763983
+
Ser
TGA
[ENA]
¡û
>W2011421195
RHLK01000025
Bacillota
Paenibacillus sp. N10 [RHLK]
6626
6714
+
Ser
TGA
[ENA]
¡û
>W2011617298
SKFG01000037
Bacillota
Paenibacillus sp. 18JY21-1 [SKFG]
6957
7045
+
Ser
TGA
[ENA]
¡û
>W2011665185
SORF01000029
Bacillota
Alicyclobacillus sacchari DSM 17974 [SORF]
478
567
+
Ser
TGA
[ENA]
¡û
>W2012037483
VIDW01000066
Bacillota
Paenibacillus sp. tmac-D7 [VIDW]
13584
13495
-
Ser
TGA
[ENA]
¡û
>W2012402103
WNZX01000015
Bacillota
Paenibacillus validus 2CS3 [WNZX]
6149
6238
+
Ser
TGA
[ENA]
¡û
>W2110011806
BCPS01000025
Bacillota
Paenibacillus sp. EPM92 [BCPS]
6183
6272
+
Ser
TGA
[ENA]
¡û
>W2110300490
JADBDR010000031
Bacillota
Paenibacillus sp. OAS669 [JADBDR]
6256
6345
+
Ser
TGA
[ENA]
¡û
>W2110580652
JAGXJX010000010
Bacillota
Paenibacillus sp. GbtcB18 [JAGXJX]
6163
6252
+
Ser
TGA
[ENA]
¡û
>W2110626924
JAHNZO010000013
Bacillota
Paenibacillus sp. SM 69 [JAHNZO]
6436
6525
+
Ser
TGA
[ENA]
¡û
>W2110645778
JAHTLB010000009
Bacillota
Paenibacillus chitinolyticus JMW06 [JAHTLB]
184981
184892
-
Ser
TGA
[ENA]
¡û
>C231107963
CP066784
Bacillota
Alicyclobacillus sp. ALC3 [CP066784]
854598
854509
-
Ser
TGA
-
¡û
>C231259729
CP089291
Bacillota
Alicyclobacillaceae bacterium MYW30-H2 [CP089291]
2983039
2982950
-
Ser
TGA
-
¡û
>C231287902
CP090978
Bacillota
Paenibacillus sp. YPD9-1 [CP090978]
6084688
6084600
-
Ser
TGA
-
¡û
>C231638335
CP121215
Bacillota
Paenibacillus elgii L146 [CP121215]
22708
22797
+
Ser
TGA
-
¡û
>W2310018080
BQWH01000027
Bacillota
Paenibacillus chitinolyticus YSY-3.1 [BQWH]
65818
65729
-
Ser
TGA
[ENA]
¡û
>W2310020271
BSBJ01000001
Bacillota
Alicyclobacillus hesperidum DSM 11985 [BSBJ]
145065
144976
-
Ser
TGA
[ENA]
¡û
>W2310020964
BSDJ01000022
Bacillota
Paenibacillus tyrfis YSS-72.2.G2 [BSDJ]
5979
6068
+
Ser
TGA
[ENA]
¡û
>W2310030608
BSUS01000001
Bacillota
Alicyclobacillus sacchari NBRC 103105 [BSUS]
2498437
2498348
-
Ser
TGA
[ENA]
¡û
>W11158498
AFDH01000143
Bacillota
Paenibacillus sp. HGF7 [AFDH]
168228
168139
-
Ser
TGA
[ENA]
¡û
>W11163542
AFHW01000138
Bacillota
Paenibacillus elgii B69 [AFHW]
17566
17477
-
Ser
TGA
[ENA]
¡û
>W1610048306
BBEA01000081
Bacillota
Paenibacillus sp. JCM 9795 [BBEA]
6031
6120
+
Ser
TGA
[ENA]
¡û
>W1610048383
BBEB01000080
Bacillota
Paenibacillus sp. JCM 9796 [BBEB]
6171
6260
+
Ser
TGA
[ENA]
¡û
>W1610067839
BCQV01000010
Bacillota
Alicyclobacillus shizuokensis NBRC 103103 [BCQV]
66366
66277
-
Ser
TGA
[ENA]
¡û
>W1610068825
BCRP01000038
Bacillota
Alicyclobacillus kakegawensis NBRC 103104 [BCRP]
1590
1679
+
Ser
TGA
[ENA]
¡û
>W121103438
AKZN01000076
Bacillota
Alicyclobacillus hesperidum URH17-3-68 [AKZN]
9917
9828
-
Ser
TGA
[ENA]
¡û
>W1610543222
JTHN01000177
Bacillota
Paenibacillus sp. A3 [JTHN]
2444
2533
+
Ser
TGA
[ENA]
¡û
>W1610548804
JXBW01000003
Bacillota
Alicyclobacillus tengchongensis [JXBW]
176580
176669
+
Ser
TGA
[ENA]
¡û
>W1610747529
LMXH01000014
Bacillota
Paenibacillus sp. FJAT-26967 [LMXH]
50484
50396
-
Ser
TGA
[ENA]
¡û
>W1610858593
LQRA01000058
Bacillota
Paenibacillus elgii [LQRA]
161922
161833
-
Ser
TGA
[ENA]
¡û
>W1710044816
BBEA01000081
Bacillota
Paenibacillus sp. JCM 9795 [BBEA]
6031
6120
+
Ser
TGA
[ENA]
¡û
>W1710044893
BBEB01000080
Bacillota
Paenibacillus sp. JCM 9796 [BBEB]
6171
6260
+
Ser
TGA
[ENA]
¡û
>W1710065212
BCQV01000010
Bacillota
Alicyclobacillus shizuokensis NBRC 103103 [BCQV]
66366
66277
-
Ser
TGA
[ENA]
¡û
>W1710066198
BCRP01000038
Bacillota
Alicyclobacillus kakegawensis NBRC 103104 [BCRP]
1590
1679
+
Ser
TGA
[ENA]
¡û
>W1710505508
FMTT01000017
Bacillota
Paenibacillus tianmuensis [FMTT]
6345
6434
+
Ser
TGA
[ENA]
¡û
>W1710529955
FNOJ01000020
Bacillota
Alicyclobacillus hesperidum [FNOJ]
10146
10057
-
Ser
TGA
[ENA]
¡û
>W1710539289
FNVF01000010
Bacillota
Paenibacillus sp. UNC499MF [FNVF]
186458
186369
-
Ser
TGA
[ENA]
¡û
>W1710578753
FPBV01000001
Bacillota
Alicyclobacillus macrosporangiidus [FPBV]
456746
456835
+
Ser
TGA
[ENA]
¡û
>W1710646353
JTHN01000177
Bacillota
Paenibacillus sp. A3 [JTHN]
2444
2533
+
Ser
TGA
[ENA]
¡û
>W1710652420
JXBW01000003
Bacillota
Alicyclobacillus tengchongensis [JXBW]
176580
176669
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK