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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274932 (54 seq.)
>W1711137482
LVBL01000006
Spirochaetota
Spirochaetales bacterium Spiro_10 [LVBL]
13913
13839
-
Met
CAT
[ENA]
¡û
>W131205904
ATFE01000012
Spirochaetota
Treponema medium ATCC 700293 [ATFE]
188615
188690
+
Met
CAT
[ENA]
¡û
>W131205783
ATFC01000003
Spirochaetota
Treponema vincentii F0403 [ATFC]
58421
58349
-
Met
CAT
[ENA]
¡û
>W131003151
AHAD01000009
Spirochaetota
Treponema denticola SP44 [AHAD]
21220
21148
-
Met
CAT
[ENA]
¡û
>C025500
AE017226
Spirochaetota
Treponema denticola ATCC 35405 [AE017226]
1202691
1202619
-
Met
CAT
[Ensembl]
¡û
>W141005479
AGDT01000021
Spirochaetota
Treponema denticola ATCC 33521 [AGDT]
12097
12169
+
Met
CAT
[ENA]
¡û
>W141005568
AGDV01000021
Spirochaetota
Treponema denticola H-22 [AGDV]
398778
398706
-
Met
CAT
[ENA]
¡û
>W141005651
AGDX01000015
Spirochaetota
Treponema denticola MYR-T [AGDX]
14087
14162
+
Met
CAT
[ENA]
¡û
>W141056052
AOTQ01000019
Spirochaetota
Treponema pedis isoM1220 [AOTQ]
11452
11380
-
Met
CAT
[ENA]
¡û
>WENV180721891
ODGL01024553
[ODGL] human metagenome; G_DNA_Subgingival plaque
403
477
+
Met
CAT
[ENA]
¡û
>WENV180728770
ODGU01092002
[ODGU] human metagenome; G_DNA_Supragingival plaque
351
276
-
Met
CAT
[ENA]
¡û
>WENV180735103
ODGZ01064911
[ODGZ] human metagenome; G_DNA_Supragingival plaque
113
41
-
Met
CAT
[ENA]
¡û
>WENV180769477
ODIG01077586
[ODIG] human metagenome; G_DNA_Tongue dorsum
530
455
-
Met
CAT
[ENA]
¡û
>WENV180797456
ODJB01062632
[ODJB] human metagenome; G_DNA_Supragingival plaque
803
875
+
Met
CAT
[ENA]
¡û
>WENV180823580
ODJW01062041
[ODJW] human metagenome; G_DNA_Supragingival plaque
477
402
-
Met
CAT
[ENA]
¡û
>WENV180843594
ODKN01005874
[ODKN] human metagenome; G_DNA_Supragingival plaque
3848
3774
-
Met
CAT
[ENA]
¡û
>WENV180846818
ODKT01024511
[ODKT] human metagenome; G_DNA_Supragingival plaque
883
955
+
Met
CAT
[ENA]
¡û
>WENV180881224
ODLZ01243703
[ODLZ] human metagenome; G_DNA_Tongue dorsum
120
45
-
Met
CAT
[ENA]
¡û
>WENV180882671
ODMC01000308
[ODMC] human metagenome; G_DNA_Tongue dorsum
5706
5781
+
Met
CAT
[ENA]
¡û
>WENV180930865
ODTP01000538
[ODTP] human metagenome; G_DNA_Tongue dorsum
5712
5787
+
Met
CAT
[ENA]
¡û
>WENV180952114
ODUH01128940
[ODUH] human metagenome; G_DNA_Subgingival plaque
7
82
+
Met
CAT
[ENA]
¡û
>WENV180952397
ODUH01291146
[ODUH] human metagenome; G_DNA_Subgingival plaque
72
-1
-
Met
CAT
[ENA]
¡û
>WENV181008991
ODWE01022742
[ODWE] human metagenome; G_DNA_Supragingival plaque
72
-1
-
Met
CAT
[ENA]
¡û
>WENV181009017
ODWE01024109
[ODWE] human metagenome; G_DNA_Supragingival plaque
705
780
+
Met
CAT
[ENA]
¡û
>WENV181039589
ODXQ01030923
[ODXQ] human metagenome; G_DNA_Tongue dorsum
626
701
+
Met
CAT
[ENA]
¡û
>WENV181050622
ODYD01033208
[ODYD] human metagenome; G_DNA_Supragingival plaque
807
735
-
Met
CAT
[ENA]
¡û
>WENV181064525
ODYP01041978
[ODYP] human metagenome; G_DNA_Supragingival plaque
191
117
-
Met
CAT
[ENA]
¡û
>WENV181078951
OEAS01001185
[OEAS] human metagenome; G_DNA_Supragingival plaque
9394
9466
+
Met
CAT
[ENA]
¡û
>WENV181079314
OEAS01004569
[OEAS] human metagenome; G_DNA_Supragingival plaque
302
375
+
Met
CAT
[ENA]
¡û
>WENV181079369
OEAS01005472
[OEAS] human metagenome; G_DNA_Supragingival plaque
2998
2924
-
Met
CAT
[ENA]
¡û
>WENV181079804
OEAS01015322
[OEAS] human metagenome; G_DNA_Supragingival plaque
812
887
+
Met
CAT
[ENA]
¡û
>WENV181146863
OEHQ01033981
[OEHQ] human metagenome; G_DNA_Supragingival plaque
539
613
+
Met
CAT
[ENA]
¡û
>WENV183509597
OMHJ01000124
[OMHJ] human oral metagenome; human oral
645
570
-
Met
CAT
[ENA]
¡û
>WENV170641286
JFJP01036306
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
1968
1892
-
Met
CAT
[ENA]
¡û
>WENV170641301
JFJP01036598
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
2521
2593
+
Met
CAT
[ENA]
¡û
>WENV170671223
LAHU01027319
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
628
702
+
Met
CAT
[ENA]
¡û
>C151046050
CP009228
Spirochaetota
Treponema putidum OMZ 758 [CP009228]
1836008
1835936
-
Met
CAT
[Ensembl]
¡û
>C211038701
CP031393
Spirochaetota
Treponema medium ATCC 700293 [CP031393]
1886794
1886869
+
Met
CAT
-
¡û
>C211038757
CP031394
Spirochaetota
Treponema phagedenis Reiter [CP031394]
2100413
2100487
+
Met
CAT
-
¡û
>W10106158
ACYH01000030
Spirochaetota
Treponema vincentii ATCC 35580 [ACYH]
11621
11549
-
Met
CAT
[ENA]
¡û
>C231061823
CP051148
Spirochaetota
Treponema vincentii OMZ 861 [CP051148]
1761942
1761870
-
Met
CAT
-
¡û
>C231061843
CP051153
Spirochaetota
Treponema vincentii OMZ 862 [CP051153]
1101239
1101311
+
Met
CAT
-
¡û
>C231062123
CP051197
Spirochaetota
Treponema vincentii OMZ 802 [CP051197]
1745289
1745217
-
Met
CAT
-
¡û
>C231062312
CP051202
Spirochaetota
Treponema sp. OMZ 791 [CP051202]
1671388
1671460
+
Met
CAT
-
¡û
>C231062357
CP051203
Spirochaetota
Treponema sp. OMZ 792 [CP051203]
1625921
1625993
+
Met
CAT
-
¡û
>C231062503
CP051301
Spirochaetota
Treponema sp. OMZ 799 [CP051301]
1356696
1356624
-
Met
CAT
-
¡û
>C231062940
CP051633
Spirochaetota
Treponema denticola OMZ 898 [CP051633]
1641894
1641966
+
Met
CAT
-
¡û
>C231063033
CP051635
Spirochaetota
Treponema denticola OMZ 905 [CP051635]
1472997
1473069
+
Met
CAT
-
¡û
>C231194505
CP084606
Spirochaetota
Brucepastera parasyntrophica RmG11 [CP084606]
3209715
3209787
+
Met
CAT
-
¡û
>C241127286
CP048020
Spirochaetota
Treponema vincentii OMZ 804 [CP048020]
1796809
1796735
-
Met
CAT
-
¡û
>C241168205
CP054692
Spirochaetota
Treponema phagedenis KS1 [CP054692]
197679
197605
-
Met
CAT
-
¡û
>W11108481
ACYH01000030
Spirochaetota
Treponema vincentii ATCC 35580 [ACYH]
11621
11549
-
Met
CAT
[ENA]
¡û
>C11119676
CP002868
Spirochaetota
Gracilinema caldarium DSM 7334 [CP002868]
1248943
1249015
+
Met
CAT
[Ensembl]
¡û
>W1610948602
LVBL01000006
Spirochaetota
Spirochaetales bacterium Spiro_10 [LVBL]
13913
13839
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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