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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.276129 (106 seq.)
>W1710802978
LJYF01000029
Alphaproteobacteria
Bradyrhizobium yuanmingense [LJYF]
199028
198952
-
Met
CAT
[ENA]
¡û
>W1710803043
LJYG01000111
Alphaproteobacteria
Bradyrhizobium manausense [LJYG]
136767
136843
+
Met
CAT
[ENA]
¡û
>W1710877737
LMQJ01000007
Alphaproteobacteria
Bradyrhizobium sp. Leaf396 [LMQJ]
18148
18072
-
Met
CAT
[ENA]
¡û
>W1711067381
LSEF01000022
Alphaproteobacteria
Bradyrhizobium neotropicale [LSEF]
29628
29552
-
Met
CAT
[ENA]
¡û
>W1711072983
LSIC01000064
Alphaproteobacteria
Bradyrhizobium sp. CCH5-F6 [LSIC]
48445
48369
-
Met
CAT
[ENA]
¡û
>W1711124813
LUKO01000174
Alphaproteobacteria
Bradyrhizobium liaoningense [LUKO]
11222
11146
-
Met
CAT
[ENA]
¡û
>W1711129601
LUUB01000074
Alphaproteobacteria
Bradyrhizobium centrolobii BR 10245 [LUUB]
59075
59151
+
Met
CAT
[ENA]
¡û
>W1711180133
LWIG01000052
Alphaproteobacteria
Bradyrhizobium sacchari BR10280 [LWIG]
63796
63720
-
Met
CAT
[ENA]
¡û
>W1711193133
LWUI01000010
Alphaproteobacteria
Bradyrhizobium elkanii [LWUI]
77354
77278
-
Met
CAT
[ENA]
¡û
>W1711206716
LXEM01000004
Alphaproteobacteria
Bradyrhizobium elkanii [LXEM]
473996
473920
-
Met
CAT
[ENA]
¡û
>W1711487056
MKFI01000003
Alphaproteobacteria
Bradyrhizobium mercantei SEMIA 6399 [MKFI]
682433
682509
+
Met
CAT
[ENA]
¡û
>W1711612974
MOXO01000013
Alphaproteobacteria
Bradyrhizobium elkanii [MOXO]
3242
3318
+
Met
CAT
[ENA]
¡û
>W1711636741
MPVQ01000058
Alphaproteobacteria
Bradyrhizobium brasilense UFLA 03-321 [MPVQ]
155746
155822
+
Met
CAT
[ENA]
¡û
>W1712049626
NFUH01000424
Alphaproteobacteria
Bradyrhizobium guangdongense [NFUH]
131
207
+
Met
CAT
[ENA]
¡û
>W131164117
ARAG01000011
Alphaproteobacteria
Bradyrhizobium elkanii USDA 76 [ARAG]
1633170
1633094
-
Met
CAT
[ENA]
¡û
>W131217293
ATWP01000001
Alphaproteobacteria
Bradyrhizobium japonicum is5 [ATWP]
1111013
1111089
+
Met
CAT
[ENA]
¡û
>W131227235
AUEZ01000051
Alphaproteobacteria
Bradyrhizobium sp. Ai1a-2 [AUEZ]
70676
70752
+
Met
CAT
[ENA]
¡û
>W131227281
AUFA01000013
Alphaproteobacteria
Bradyrhizobium sp. Cp5.3 [AUFA]
178353
178429
+
Met
CAT
[ENA]
¡û
>W131228666
AUGD01000001
Alphaproteobacteria
Bradyrhizobium japonicum in8p8 [AUGD]
18406
18330
-
Met
CAT
[ENA]
¡û
>C004041
CP000494
Alphaproteobacteria
Bradyrhizobium sp. BTAi1 [CP000494]
1951990
1952066
+
Met
CAT
[Ensembl]
¡û
>C004106
CU234118
Alphaproteobacteria
Bradyrhizobium sp. ORS 278 ORS278 [CU234118]
6111881
6111805
-
Met
CAT
[Ensembl]
¡û
>C171021113
CP013127
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 122 [CP013127]
7917822
7917746
-
Met
CAT
-
¡û
>C171131931
LT859959
Alphaproteobacteria
Bradyrhizobium sp. ORS 285 [LT859959]
1063207
1063283
+
Met
CAT
-
¡û
>W141001327
ADOU01000138
Alphaproteobacteria
Bradyrhizobium diazoefficiens SEMIA 5080 [ADOU]
6078
6002
-
Met
CAT
[ENA]
¡û
>WENV180105034
OAPD01002188
[OAPD] marine metagenome; 2010
487
563
+
Met
CAT
[ENA]
¢þ
>WENV180635791
OCRE01009092
[OCRE] marine metagenome; Seawater
438
362
-
Met
CAT
[ENA]
¢þ
>W141063658
APJD01000018
Alphaproteobacteria
Bradyrhizobium sp. OHSU_III [APJD]
64861
64937
+
Met
CAT
[ENA]
¡û
>WENV181166171
OEIS01520539
[OEIS] soil metagenome; soil
162
86
-
Met
CAT
[ENA]
¢þ
>WENV181167392
OEIU01025012
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
896
820
-
Met
CAT
[ENA]
¢þ
>W141149738
AWZU01000001
Alphaproteobacteria
Bradyrhizobium sp. ARR65 [AWZU]
378966
379042
+
Met
CAT
[ENA]
¡û
>W141150130
AXAD01000006
Alphaproteobacteria
Bradyrhizobium arachidis USDA 3384 [AXAD]
12821
12745
-
Met
CAT
[ENA]
¡û
>W141150336
AXAH01000022
Alphaproteobacteria
Bradyrhizobium elkanii USDA 3254 [AXAH]
91296
91372
+
Met
CAT
[ENA]
¡û
>W141150348
AXAI01000001
Alphaproteobacteria
Bradyrhizobium sp. Tv2a-2 [AXAI]
403158
403082
-
Met
CAT
[ENA]
¡û
>W141150725
AXAP01000028
Alphaproteobacteria
Bradyrhizobium elkanii WSM2783 [AXAP]
33925
33849
-
Met
CAT
[ENA]
¡û
>W141150992
AXAS01000013
Alphaproteobacteria
Bradyrhizobium sp. Ec3.3 [AXAS]
174473
174397
-
Met
CAT
[ENA]
¡û
>W141151111
AXAU01000013
Alphaproteobacteria
Bradyrhizobium murdochi WSM1741 [AXAU]
88804
88880
+
Met
CAT
[ENA]
¡û
>W141151180
AXAW01000005
Alphaproteobacteria
Bradyrhizobium elkanii USDA 3259 [AXAW]
329908
329832
-
Met
CAT
[ENA]
¡û
>W141151232
AXAX01000005
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 122 [AXAX]
441886
441962
+
Met
CAT
[ENA]
¡û
>W141151320
AXAZ01000015
Alphaproteobacteria
Bradyrhizobium sp. WSM1743 [AXAZ]
148506
148582
+
Met
CAT
[ENA]
¡û
>W141151481
AXBC01000006
Alphaproteobacteria
Bradyrhizobium genosp. SA-4 SA-4 str. CB756 [AXBC]
397524
397448
-
Met
CAT
[ENA]
¡û
>W141168851
AXVG01000018
Alphaproteobacteria
Bradyrhizobium japonicum 22 [AXVG]
11231
11155
-
Met
CAT
[ENA]
¡û
>W141213977
AZSJ01000003
Alphaproteobacteria
Afipia sp. P52-10 [AZSJ]
2628281
2628357
+
Met
CAT
[ENA]
¡û
>W141233884
BAWE01000004
Alphaproteobacteria
Bradyrhizobium sp. DOA9 [BAWE]
675163
675239
+
Met
CAT
[ENA]
¡û
>WENV182406755
OIFA01001778
[OIFA] human gut metagenome; stool
339
263
-
Met
CAT
[ENA]
¢þ
>WENV182409088
OIFG01001323
[OIFG] human gut metagenome; stool
2499
2575
+
Met
CAT
[ENA]
¢þ
>WENV182411645
OIFP01009934
[OIFP] human gut metagenome; stool
521
597
+
Met
CAT
[ENA]
¢þ
>W141240086
CAFK01000179
Alphaproteobacteria
Bradyrhizobium sp. STM 3843 [CAFK]
16476
16552
+
Met
CAT
[ENA]
¡û
>W141278135
JAFC01000057
Alphaproteobacteria
Bradyrhizobium elkanii USDA 94 [JAFC]
4757
4681
-
Met
CAT
[ENA]
¡û
>WENV182955005
OKWB01003326
[OKWB] human gut metagenome; stool
283
359
+
Met
CAT
[ENA]
¢þ
>WENV182963036
OKWP01000112
[OKWP] human gut metagenome; stool
1565
1489
-
Met
CAT
[ENA]
¢þ
>WENV182966358
OKWV01001120
[OKWV] human gut metagenome; stool
1423
1499
+
Met
CAT
[ENA]
¢þ
>WENV182967364
OKWZ01005536
[OKWZ] human gut metagenome; stool
502
426
-
Met
CAT
[ENA]
¢þ
>C181113164
CP025113
Alphaproteobacteria
Bradyrhizobium sp. SK17 [CP025113]
2772660
2772736
+
Met
CAT
-
¡û
>C181203866
LS398110
Alphaproteobacteria
Bradyrhizobium vignae [LS398110]
7191758
7191682
-
Met
CAT
-
¡û
>C191019704
CP022219
Alphaproteobacteria
Bradyrhizobium guangxiense CCBAU 53363 [CP022219]
5506966
5506890
-
Met
CAT
-
¡û
>C191019747
CP022221
Alphaproteobacteria
Bradyrhizobium zhanjiangense CCBAU 51778 [CP022221]
8538814
8538738
-
Met
CAT
-
¡û
>C191071664
CP030051
Alphaproteobacteria
Bradyrhizobium guangdongense CCBAU 51649 [CP030051]
1687521
1687597
+
Met
CAT
-
¡û
>C191071710
CP030053
Alphaproteobacteria
Bradyrhizobium guangzhouense CCBAU 51670 [CP030053]
1536489
1536565
+
Met
CAT
-
¡û
>W09104098
AALJ01000001
Alphaproteobacteria
Bradyrhizobium sp. BTAi1 [AALJ]
1104837
1104913
+
Met
CAT
[ENA]
¡û
>W1910183125
BJNL01000031
Alphaproteobacteria
Bradyrhizobium elkanii NBRC 14791 [BJNL]
35992
36068
+
Met
CAT
[ENA]
¡û
>W1910598238
LAXE01000001
Alphaproteobacteria
Bradyrhizobium sp. SUTN9-2 [LAXE]
2141607
2141683
+
Met
CAT
[ENA]
¡û
>W1910598950
LBJC01000028
Alphaproteobacteria
Bradyrhizobium nanningense CCBAU 53390 [LBJC]
209125
209049
-
Met
CAT
[ENA]
¡û
>W1910598981
LBJM01000011
Alphaproteobacteria
Bradyrhizobium zhanjiangense CCBAU 51787 [LBJM]
100281
100205
-
Met
CAT
[ENA]
¡û
>W1910599025
LBJQ01000006
Alphaproteobacteria
Bradyrhizobium nanningense CCBAU 51757 [LBJQ]
143503
143427
-
Met
CAT
[ENA]
¡û
>W1910693488
MDEP01000052
Alphaproteobacteria
Bradyrhizobium sp. UASWS1016 [MDEP]
815820
815744
-
Met
CAT
[ENA]
¡û
>W1911629502
PSRR01000106
Alphaproteobacteria
Bradyrhizobium sp. Leo170 [PSRR]
5161
5237
+
Met
CAT
[ENA]
¡û
>W1911629538
PSRS01000019
Alphaproteobacteria
Bradyrhizobium sp. Leo121 [PSRS]
7952
8028
+
Met
CAT
[ENA]
¡û
>W1911629591
PSRT01000026
Alphaproteobacteria
Bradyrhizobium genosp. SA-3 SA-3 Rp7b [PSRT]
33310
33234
-
Met
CAT
[ENA]
¡û
>W1911817847
QZMV01000001
Alphaproteobacteria
Bradyrhizobium sp. LVM 105 [QZMV]
43387
43463
+
Met
CAT
[ENA]
¡û
>W1810104426
PGVG01000016
Alphaproteobacteria
Bradyrhizobium forestalis INPA54B [PGVG]
99533
99457
-
Met
CAT
[ENA]
¡û
>SRA1014324
SRR023845.89083
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
227
151
-
Met
CAT
[SRA]
>W1511508002
JXOF01000185
Alphaproteobacteria
Bradyrhizobium elkanii UASWS1015 [JXOF]
453652
453576
-
Met
CAT
[ENA]
¡û
>W1511681421
LFIP01000065
Alphaproteobacteria
Bradyrhizobium embrapense SEMIA 6208 [LFIP]
21916
21992
+
Met
CAT
[ENA]
¡û
>W1511681489
LFIQ01000119
Alphaproteobacteria
Bradyrhizobium pachyrhizi PAC 48 [LFIQ]
429634
429558
-
Met
CAT
[ENA]
¡û
>W1511684052
LFLZ01000119
Alphaproteobacteria
Bradyrhizobium tropiciagri SEMIA 6148 [LFLZ]
10969
10893
-
Met
CAT
[ENA]
¡û
>W1511706717
LGUJ01000033
Alphaproteobacteria
Bradyrhizobium diazoefficiens Is-1 [LGUJ]
6099
6023
-
Met
CAT
[ENA]
¡û
>C161001057
AP014685
Alphaproteobacteria
Bradyrhizobium diazoefficiens NK6 [AP014685]
1850501
1850425
-
Met
CAT
-
¡û
>C161097210
CP016428
Alphaproteobacteria
Bradyrhizobium icense LMTR 13 [CP016428]
6992246
6992170
-
Met
CAT
[Ensembl]
¡û
>W121065183
AJPV01000037
Alphaproteobacteria
Bradyrhizobium elkanii CCBAU 05737 [AJPV]
5039
5115
+
Met
CAT
[ENA]
¡û
>W121065247
AJPW01000139
Alphaproteobacteria
Bradyrhizobium elkanii CCBAU 43297 [AJPW]
3216
3292
+
Met
CAT
[ENA]
¡û
>W121065377
AJPZ01000045
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15618 [AJPZ]
3758
3834
+
Met
CAT
[ENA]
¡û
>W121065556
AJQC01000670
Alphaproteobacteria
Bradyrhizobium liaoningense CCBAU 05525 [AJQC]
3553
3629
+
Met
CAT
[ENA]
¡û
>W121065591
AJQD01000523
Alphaproteobacteria
Bradyrhizobium liaoningense CCBAU 83689 [AJQD]
3554
3630
+
Met
CAT
[ENA]
¡û
>W121065623
AJQE01000139
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 43298 [AJQE]
1924
2000
+
Met
CAT
[ENA]
¡û
>W121065811
AJQI01000091
Alphaproteobacteria
Bradyrhizobium diazoefficiens CCBAU 41267 [AJQI]
7489
7565
+
Met
CAT
[ENA]
¡û
>W121065883
AJQJ01000376
Alphaproteobacteria
Bradyrhizobium yuanmingense CCBAU 05623 [AJQJ]
27817
27741
-
Met
CAT
[ENA]
¡û
>W121065897
AJQK01000055
Alphaproteobacteria
Bradyrhizobium yuanmingense CCBAU 25021 [AJQK]
7688
7764
+
Met
CAT
[ENA]
¡û
>W121065943
AJQL01000056
Alphaproteobacteria
Bradyrhizobium yuanmingense CCBAU 35157 [AJQL]
3365
3441
+
Met
CAT
[ENA]
¡û
>W121127102
CAFH01000270
Alphaproteobacteria
Bradyrhizobium sp. ORS 285 [CAFH]
205
281
+
Met
CAT
[ENA]
¡û
>W121127128
CAFI01000188
Alphaproteobacteria
Bradyrhizobium sp. ORS 375 [CAFI]
87
11
-
Met
CAT
[ENA]
¡û
>W1610514419
FMAE01000003
Alphaproteobacteria
Bradyrhizobium yuanmingense [FMAE]
681382
681458
+
Met
CAT
[ENA]
¡û
>W1610666835
LJYF01000029
Alphaproteobacteria
Bradyrhizobium yuanmingense [LJYF]
199028
198952
-
Met
CAT
[ENA]
¡û
>W1610666900
LJYG01000111
Alphaproteobacteria
Bradyrhizobium manausense [LJYG]
136767
136843
+
Met
CAT
[ENA]
¡û
>W1610740083
LMQJ01000007
Alphaproteobacteria
Bradyrhizobium sp. Leaf396 [LMQJ]
18148
18072
-
Met
CAT
[ENA]
¡û
>W1610907951
LSEF01000022
Alphaproteobacteria
Bradyrhizobium neotropicale [LSEF]
29628
29552
-
Met
CAT
[ENA]
¡û
>W1610912243
LSIC01000064
Alphaproteobacteria
Bradyrhizobium sp. CCH5-F6 [LSIC]
48445
48369
-
Met
CAT
[ENA]
¡û
>W1610935785
LUKO01000174
Alphaproteobacteria
Bradyrhizobium liaoningense [LUKO]
11222
11146
-
Met
CAT
[ENA]
¡û
>W1610940674
LUUB01000074
Alphaproteobacteria
Bradyrhizobium centrolobii BR 10245 [LUUB]
59075
59151
+
Met
CAT
[ENA]
¡û
>W1710500109
FMAE01000003
Alphaproteobacteria
Bradyrhizobium yuanmingense [FMAE]
681382
681458
+
Met
CAT
[ENA]
¡û
>W1710513071
FMZW01000049
Alphaproteobacteria
Bradyrhizobium brasilense R5 [FMZW]
34267
34191
-
Met
CAT
[ENA]
¡û
>W1710516756
FNCU01000014
Alphaproteobacteria
Bradyrhizobium sp. Rc2d [FNCU]
122251
122327
+
Met
CAT
[ENA]
¡û
>W1710564454
FOQM01000052
Alphaproteobacteria
Bradyrhizobium sp. Gha [FOQM]
33848
33772
-
Met
CAT
[ENA]
¡û
>W1710571320
FOVU01000016
Alphaproteobacteria
Bradyrhizobium sp. Ghvi [FOVU]
94771
94847
+
Met
CAT
[ENA]
¡û
>W1710578524
FPBQ01000013
Alphaproteobacteria
Bradyrhizobium arachidis [FPBQ]
23206
23130
-
Met
CAT
[ENA]
¡û
>W1710735583
LGHK01000058
Alphaproteobacteria
Bradyrhizobium sp. NAS96.2 [LGHK]
13471
13395
-
Met
CAT
[ENA]
¡û
>W1710735710
LGHM01000173
Alphaproteobacteria
Bradyrhizobium sp. AS23.2 [LGHM]
14998
14922
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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