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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285949 (19 seq.)
>W1711137271
LVBE01000059
Spirochaetota
Spirochaetales bacterium Spiro_03 [LVBE]
12564
12637
+
Thr
GGT
[ENA]
¡û
>W1711137291
LVBF01000054
Spirochaetota
Spirochaetales bacterium Spiro_04 [LVBF]
3764
3836
+
Thr
GGT
[ENA]
¡û
>W131176137
ARJU01000074
Spirochaetota
Sediminispirochaeta bajacaliforniensis DSM 16054 [ARJU]
91375
91302
-
Thr
GGT
[ENA]
¡û
>W1711422299
MIAV01000038
Spirochaetota
Spirochaetes bacterium GWC2_52_13 [MIAV]
14235
14307
+
Thr
GGT
[ENA]
¡û
>WENV180042928
LQAH01000006
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
204220
204147
-
Thr
GGT
[ENA]
¡û
>WENV180095228
MTBK01057099
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
285
357
+
Thr
GGT
[ENA]
¡û
>WENV180098196
MTBK01232695
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
152
224
+
Thr
GGT
[ENA]
¡û
>WENV180298485
OBJA01370031
[OBJA] soil metagenome; sediment, water from around vicinity
282
209
-
Thr
GGT
[ENA]
¡û
>WENV181231763
OFEK01062611
[OFEK] activated sludge metagenome; Anaerobic digester
82
10
-
Thr
GGT
[ENA]
¡û
>WENV170684820
LFRM01060085
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
900
828
-
Thr
GGT
[ENA]
¡û
>WENV170688358
LFRM01241259
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
470
542
+
Thr
GGT
[ENA]
¡û
>WENV170717565
LSQX01040773
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
15813
15885
+
Thr
GGT
[ENA]
¡û
>WENV170720103
LSQX01141153
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
8951
9023
+
Thr
GGT
[ENA]
¡û
>WENV170725326
LSQX01339063
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
12720
12793
+
Thr
GGT
[ENA]
¡û
>WENV170968761
MTKW01014031
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1907
1835
-
Thr
GGT
[ENA]
¡û
>WENV170969748
MTKW01038284
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
102
30
-
Thr
GGT
[ENA]
¡û
>C10112568
CP002116
Spirochaetota
Sediminispirochaeta smaragdinae DSM 11293 [CP002116]
997343
997416
+
Thr
GGT
[Ensembl]
¡û
>W1610948391
LVBE01000059
Spirochaetota
Spirochaetales bacterium Spiro_03 [LVBE]
12564
12637
+
Thr
GGT
[ENA]
¡û
>W1610948411
LVBF01000054
Spirochaetota
Spirochaetales bacterium Spiro_04 [LVBF]
3764
3836
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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