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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.288708 (57 seq.)
>W131108934
APGP01000030
Bacillota
Caldicellulosiruptor sp. F32 [APGP]
175228
175153
-
Met
CAT
[ENA]
¡û
>W131218315
ATXO01000013
Bacillota
Caldicellulosiruptor acetigenus DSM 7040 [ATXO]
4503
4428
-
Met
CAT
[ENA]
¡û
>W131219103
ATYG01000038
Bacillota
Carboxydothermus ferrireducens DSM 11255 [ATYG]
1648
1573
-
Met
CAT
[ENA]
¡û
>C005900
CP000141
Bacillota
Carboxydothermus hydrogenoformans Z-2901 [CP000141]
2090975
2090900
-
Met
CAT
[Ensembl]
¡û
>C006921
CP000679
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [CP000679]
2324141
2324066
-
Met
CAT
[Ensembl]
¡û
>WENV180565208
OCLF01068743
[OCLF] human gut metagenome; human gut
53
128
+
fMet
CAT
[ENA]
¢þ
>WENV181226048
OFDK01000009
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
211
286
+
fMet
CAT
[ENA]
¢þ
>WENV181285458
OFGS01000528
[OFGS] hot springs metagenome; Water and soil
3887
3962
+
fMet
CAT
[ENA]
¢þ
>WENV181408652
OGCH01007511
[OGCH] hot springs metagenome; hot springs
2272
2347
+
fMet
CAT
[ENA]
¢þ
>WENV183647446
OQVS01000727
[OQVS] human gut metagenome; human gut
2605
2680
+
fMet
CAT
[ENA]
¢þ
>WENV170563342
CZCB01015489
[CZCB] anaerobic digester metagenome; anaerobic digester
4156
4231
+
Met
CAT
[ENA]
¢þ
>C181054341
CP021850
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5807 [CP021850]
80384
80459
+
Met
CAT
-
¡û
>C191131107
CP034791
Bacillota
Caldicellulosiruptor changbaiensis CBS-Z [CP034791]
1091332
1091407
+
Met
CAT
-
¡û
>W09104557
AALW01000063
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [AALW]
462
387
-
Met
CAT
[ENA]
¡û
>W09113802
ABYZ01000002
Bacillota
Caldicellulosiruptor bescii DSM 6725 [ABYZ]
233652
233727
+
Met
CAT
[ENA]
¡û
>W1910927525
NIOI01000002
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5809 [NIOI]
863896
863971
+
Met
CAT
[ENA]
¡û
>W1910927577
NIOJ01000032
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5806 [NIOJ]
38305
38230
-
Met
CAT
[ENA]
¡û
>W1910927634
NIOK01000033
Bacillota
Pseudoclostridium thermosuccinogenes DSM 5808 [NIOK]
38305
38230
-
Met
CAT
[ENA]
¡û
>C09100857
CP001393
Bacillota
Caldicellulosiruptor bescii DSM 6725 [CP001393]
1603610
1603535
-
Met
CAT
[Ensembl]
¡û
>W1911155362
NPJY01000001
Bacillota
Caldicellulosiruptor bescii RKCB122 [NPJY]
1783986
1783911
-
Met
CAT
[ENA]
¡û
>W1911244054
NSHA01000001
Bacillota
Caldicellulosiruptor bescii RKCB123 [NSHA]
941441
941366
-
Met
CAT
[ENA]
¡û
>W1911244102
NSHB01000001
Bacillota
Caldicellulosiruptor bescii RKCB125 [NSHB]
1320928
1320853
-
Met
CAT
[ENA]
¡û
>W1911244143
NSHC01000001
Bacillota
Caldicellulosiruptor bescii RKCB126 [NSHC]
1873893
1873818
-
Met
CAT
[ENA]
¡û
>W1911244179
NSHD01000001
Bacillota
Caldicellulosiruptor bescii RKCB121 [NSHD]
1217249
1217324
+
Met
CAT
[ENA]
¡û
>W1911244212
NSHE01000001
Bacillota
Caldicellulosiruptor bescii RKCB120 [NSHE]
626203
626278
+
Met
CAT
[ENA]
¡û
>W1911572542
PDCA01000001
Bacillota
Caldicellulosiruptor bescii RKCB124 [PDCA]
1155425
1155500
+
Met
CAT
[ENA]
¡û
>W1911572596
PDCB01000001
Bacillota
Caldicellulosiruptor bescii RKCB129 [PDCB]
2580268
2580193
-
Met
CAT
[ENA]
¡û
>W1911572637
PDCD01000002
Bacillota
Caldicellulosiruptor bescii RKCB128 [PDCD]
1258410
1258485
+
Met
CAT
[ENA]
¡û
>W1810052247
PDCC01000001
Bacillota
Caldicellulosiruptor bescii RKCB127 [PDCC]
712458
712533
+
Met
CAT
[ENA]
¡û
>W1810071895
PEEZ01000002
Bacillota
Caldicellulosiruptor bescii RKCB131 [PEEZ]
1201517
1201592
+
Met
CAT
[ENA]
¡û
>W1810071944
PEFA01000001
Bacillota
Caldicellulosiruptor bescii RKCB130 [PEFA]
2219260
2219335
+
Met
CAT
[ENA]
¡û
>W1810071998
PEFB01000001
Bacillota
Caldicellulosiruptor bescii RKCB133 [PEFB]
2506326
2506251
-
Met
CAT
[ENA]
¡û
>W1810368023
PVZD01000002
Bacillota
Caldicellulosiruptor bescii RKCB132 [PVZD]
2369365
2369290
-
Met
CAT
[ENA]
¡û
>C10103642
CP002164
Bacillota
Caldicellulosiruptor obsidiansis OB47 [CP002164]
1155227
1155302
+
Met
CAT
[Ensembl]
¡û
>C11105212
CP002219
Bacillota
Caldicellulosiruptor hydrothermalis 108 [CP002219]
1250005
1250080
+
Met
CAT
[Ensembl]
¡û
>C11105404
CP002326
Bacillota
Caldicellulosiruptor acetigenus I77R1B [CP002326]
1595181
1595106
-
Met
CAT
[Ensembl]
¡û
>C11105437
CP002330
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [CP002330]
1368316
1368391
+
Met
CAT
[Ensembl]
¡û
>C11105498
CP003001
Bacillota
Caldicellulosiruptor acetigenus 6A [CP003001]
989196
989121
-
Met
CAT
[Ensembl]
¡û
>C11105879
CP002216
Bacillota
Caldicellulosiruptor owensensis OL [CP002216]
1381305
1381230
-
Met
CAT
[Ensembl]
¡û
>W11139371
AEKB01000001
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [AEKB]
118441
118366
-
Met
CAT
[ENA]
¡û
>W11139441
AEKC01000047
Bacillota
Caldicellulosiruptor acetigenus 177R1B [AEKC]
8699
8774
+
Met
CAT
[ENA]
¡û
>W11139491
AEKD01000073
Bacillota
Caldicellulosiruptor acetigenus 6A [AEKD]
2299
2374
+
Met
CAT
[ENA]
¡û
>W1511563972
LACM01000001
Bacillota
Caldicellulosiruptor danielii Wai35.B1 [LACM]
1772098
1772023
-
Met
CAT
[ENA]
¡û
>W1511564008
LACN01000006
Bacillota
Caldicellulosiruptor naganoensis NA10 [LACN]
488606
488531
-
Met
CAT
[ENA]
¡û
>W1511564053
LACO01000001
Bacillota
Caldicellulosiruptor morganii Rt8.B8 [LACO]
1192559
1192634
+
Met
CAT
[ENA]
¡û
>W1610613544
LGFZ01000008
Bacillota
Desulfotomaculum sp. 46_296 [LGFZ]
10111
10036
-
Met
CAT
[ENA]
¡û
>W1710083562
BDJK01000030
Bacillota
Carboxydothermus pertinax [BDJK]
536
461
-
Met
CAT
[ENA]
¡û
>W1710083591
BDJL01000005
Bacillota
Carboxydothermus islandicus [BDJL]
665
590
-
Met
CAT
[ENA]
¡û
>W1710603745
FUZJ01000001
Bacillota
Caldicellulosiruptor bescii [FUZJ]
1700123
1700198
+
Met
CAT
[ENA]
¡û
>W1710603843
FUZL01000001
Bacillota
Caldicellulosiruptor bescii [FUZL]
757157
757082
-
Met
CAT
[ENA]
¡û
>W1710603930
FUZN01000002
Bacillota
Caldicellulosiruptor bescii [FUZN]
1703993
1703918
-
Met
CAT
[ENA]
¡û
>W1710605093
FWDH01000001
Bacillota
Caldicellulosiruptor bescii [FWDH]
769116
769041
-
Met
CAT
[ENA]
¡û
>W1710609667
FXXC01000001
Bacillota
Caldicellulosiruptor bescii [FXXC]
1618766
1618841
+
Met
CAT
[ENA]
¡û
>W1710609705
FXXD01000002
Bacillota
Caldicellulosiruptor bescii [FXXD]
1019917
1019992
+
Met
CAT
[ENA]
¡û
>W1710609774
FXXE01000001
Bacillota
Caldicellulosiruptor bescii [FXXE]
1875548
1875473
-
Met
CAT
[ENA]
¡û
>W1710609820
FXXF01000001
Bacillota
Caldicellulosiruptor bescii [FXXF]
1868090
1868015
-
Met
CAT
[ENA]
¡û
>W1710734716
LGFZ01000008
Bacillota
Desulfotomaculum sp. 46_296 [LGFZ]
10111
10036
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK