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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.300569 (23 seq.)
>W1711345189
MCNP01000157
Bacillota
Halanaerobium sp. 4-GBenrich [MCNP]
1210
1135
-
Ala
TGC
[ENA]
¡û
>W131250024
CAUI01000014
Bacillota
Halanaerobium saccharolyticum subsp. saccharolyticum DSM 6643 [CAUI]
456
531
+
Ala
TGC
[ENA]
¡û
>W131250047
CAUI01000017
Bacillota
Halanaerobium saccharolyticum subsp. saccharolyticum DSM 6643 [CAUI]
304
379
+
Ala
TGC
[ENA]
¡û
>W131250061
CAUI01000023
Bacillota
Halanaerobium saccharolyticum subsp. saccharolyticum DSM 6643 [CAUI]
575
500
-
Ala
TGC
[ENA]
¡û
>WENV180656303
OCVV010538332
[OCVV] gut metagenome; gut
434
359
-
Ala
TGC
[ENA]
¢þ
>WENV180656304
OCVV010538332
[OCVV] gut metagenome; gut
434
359
-
Ala
TGC
[ENA]
¢þ
>WENV182754498
OJRD01020867
[OJRD] human gut metagenome; stool sample
905
830
-
Ala
TGC
[ENA]
¢þ
>WENV170562657
CZCB01004238
[CZCB] anaerobic digester metagenome; anaerobic digester
1430
1355
-
Ala
TGC
[ENA]
¢þ
>WENV170674743
LCWY01001468
[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
28
103
+
Ala
TGC
[ENA]
¢þ
>WENV170674933
LCWY01026288
[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
98
173
+
Ala
TGC
[ENA]
¢þ
>WENV170675081
LCWZ01003486
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
1398
1323
-
Ala
TGC
[ENA]
¢þ
>WENV170675468
LCWZ01085566
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
164
239
+
Ala
TGC
[ENA]
¢þ
>W1810503738
QBKJ01000001
Bacillota
Halanaerobium congolense WG5_pb [QBKJ]
1579749
1579824
+
Ala
TGC
[ENA]
¡û
>W1810503782
QBKJ01000001
Bacillota
Halanaerobium congolense WG5_pb [QBKJ]
238184
238109
-
Ala
TGC
[ENA]
¡û
>W1510045175
CCMJ01000094
Bacillota
Aneurinibacillus migulanus [CCMJ]
248
321
+
Ala
TGC
[ENA]
¡û
>C10100119
CP002105
Bacillota
Acetohalobium arabaticum DSM 5501 [CP002105]
12355
12430
+
Ala
TGC
[Ensembl]
¡û
>C11110010
CP002304
Bacillota
Halanaerobium hydrogeniformans sapolanicus [CP002304]
11288
11363
+
Ala
TGC
[Ensembl]
¡û
>C11110043
CP002304
Bacillota
Halanaerobium hydrogeniformans sapolanicus [CP002304]
2149642
2149567
-
Ala
TGC
[Ensembl]
¡û
>C11110049
CP002304
Bacillota
Halanaerobium hydrogeniformans sapolanicus [CP002304]
1822776
1822701
-
Ala
TGC
[Ensembl]
¡û
>C11110553
CP002175
Bacillota
Halanaerobium praevalens DSM 2228 [CP002175]
12190
12265
+
Ala
TGC
[Ensembl]
¡û
>C11110566
CP002175
Bacillota
Halanaerobium praevalens DSM 2228 [CP002175]
781321
781396
+
Ala
TGC
[Ensembl]
¡û
>W1511706589
LGUG01000009
Bacillota
Aneurinibacillus migulanus DSM 2895 [LGUG]
204106
204031
-
Ala
TGC
[ENA]
¡û
>W1710521646
FNGO01000004
Bacillota
Halarsenatibacter silvermanii [FNGO]
51247
51172
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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