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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.301494 (47 seq.)
>W1710926291
LOED01000057
Bacillota
Fervidicola ferrireducens [LOED]
309
234
-
Lys
TTT
[ENA]
¡û
>W1710932125
LOHZ01000030
Bacillota
Thermovenabulum gondwanense [LOHZ]
101441
101366
-
Lys
TTT
[ENA]
¡û
>W1711342429
MCHF01000002
Bacillota
Dehalobacter sp. TeCB1 [MCHF]
169772
169847
+
Lys
TTT
[ENA]
¡û
>W131162546
AQYY01000019
Bacillota
Dehalobacter sp. FTH1 [AQYY]
25578
25503
-
Lys
TTT
[ENA]
¡û
>W131237153
AUMW01000016
Bacillota
Desulfotruncus alcoholivorax DSM 16058 [AUMW]
33186
33261
+
Lys
TTT
[ENA]
¡û
>WENV180345901
OBLN01010541
[OBLN] sediment metagenome; sediment
370
445
+
Lys
TTT
[ENA]
¢þ
>w002200
AAAW04000006
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
68725
68648
-
Lys
TTT
[ENA]
¡û
>w002185
AAAW04000006
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
71876
71799
-
Lys
TTT
[ENA]
¡û
>w002153
AAAW04000003
Bacillota
Desulfitobacterium hafniense DCB-2 [AAAW]
607233
607310
+
Lys
TTT
[ENA]
¡û
>W141088293
AUUR01000120
Bacillota
Dehalobacter sp. UNSWDHB [AUUR]
17623
17548
-
Lys
TTT
[ENA]
¡û
>WENV181226060
OFDK01000012
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
97028
96953
-
Lys
TTT
[ENA]
¢þ
>WENV181231452
OFEK01028567
[OFEK] activated sludge metagenome; Anaerobic digester
341
416
+
Lys
TTT
[ENA]
¢þ
>W141246575
CANE01000031
Bacillota
Dehalobacter restrictus E1 [CANE]
14613
14688
+
Lys
TTT
[ENA]
¡û
>W141246657
CANF01002296
Bacillota
Dehalobacter sp. E1 x Sedimentibacter sp. B4 coculture E1 X Sedimentibacter sp. B4 coculture [CANF]
5616
5541
-
Lys
TTT
[ENA]
¡û
>WENV170002619
AGTN01085420
[AGTN] bioreactor metagenome; poplar biomass
665
740
+
Lys
TTT
[ENA]
¢þ
>WENV170562225
CZCB01001440
[CZCB] anaerobic digester metagenome; anaerobic digester
77433
77358
-
Lys
TTT
[ENA]
¢þ
>WENV170562912
CZCB01007222
[CZCB] anaerobic digester metagenome; anaerobic digester
11757
11682
-
Lys
TTT
[ENA]
¢þ
>WENV170563006
CZCB01008631
[CZCB] anaerobic digester metagenome; anaerobic digester
243
168
-
Lys
TTT
[ENA]
¢þ
>WENV170563861
CZCB01032758
[CZCB] anaerobic digester metagenome; anaerobic digester
2366
2441
+
Lys
TTT
[ENA]
¢þ
>WENV170684219
LFRM01027108
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
12182
12107
-
Lys
TTT
[ENA]
¢þ
>WENV170687233
LFRM01184419
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
243
168
-
Lys
TTT
[ENA]
¢þ
>WENV170687270
LFRM01186240
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
425
500
+
Lys
TTT
[ENA]
¢þ
>C141011743
CP007033
Bacillota
Dehalobacter restrictus DSM 9455 PER-K23; DSM 9455 [CP007033]
1153448
1153523
+
Lys
TTT
[Ensembl]
¡û
>W1910647144
LXPC01000002
Bacillota
Dehalobacter sp. MCB1 [LXPC]
25547
25472
-
Lys
TTT
[ENA]
¡û
>C09103989
CP001336
Bacillota
Desulfitobacterium hafniense DCB-2 [CP001336]
2798026
2798101
+
Lys
TTT
[Ensembl]
¡û
>C09104004
CP001336
Bacillota
Desulfitobacterium hafniense DCB-2 [CP001336]
2801177
2801252
+
Lys
TTT
[Ensembl]
¡û
>C09104018
CP001336
Bacillota
Desulfitobacterium hafniense DCB-2 [CP001336]
5250552
5250477
-
Lys
TTT
[Ensembl]
¡û
>W1911608711
PNXX01000013
Bacillota
Dehalobacter sp. 14DCB1 [PNXX]
23102
23177
+
Lys
TTT
[ENA]
¡û
>W1911613541
POSF01000006
Bacillota
Dehalobacter sp. 12DCB1 [POSF]
25298
25223
-
Lys
TTT
[ENA]
¡û
>W1911769135
QXHL01000003
Bacillota
Alicyclobacillaceae bacterium I2511 I2511 [QXHL]
576
501
-
Lys
TTT
[ENA]
¡û
>W1810004233
BFAV01000030
Bacillota
Desulfocucumis palustris NAW-5 [BFAV]
4119
4194
+
Lys
TTT
[ENA]
¡û
>W1810004244
BFAV01000104
Bacillota
Desulfocucumis palustris NAW-5 [BFAV]
68296
68221
-
Lys
TTT
[ENA]
¡û
>C10113531
CP002131
Bacillota
Thermosediminibacter oceani DSM 16646 [CP002131]
2247890
2247815
-
Lys
TTT
[Ensembl]
¡û
>W1511430082
JUEF01000049
Bacillota
Peptococcaceae bacterium BICA1-8 [JUEF]
41854
41929
+
Lys
TTT
[ENA]
¡û
>W1511564286
LADP01000024
Bacillota
Peptococcaceae bacterium BRH_c8a [LADP]
11651
11726
+
Lys
TTT
[ENA]
¡û
>W1511564482
LADT01000068
Bacillota
Clostridiaceae bacterium BRH_c20a [LADT]
13269
13344
+
Lys
TTT
[ENA]
¡û
>W1511564495
LADT01000084
Bacillota
Clostridiaceae bacterium BRH_c20a [LADT]
5084
5159
+
Lys
TTT
[ENA]
¡û
>C131008536
CP003869
Bacillota
Dehalobacter sp. DCA [CP003869]
2085222
2085147
-
Lys
TTT
[Ensembl]
¡û
>C131008587
CP003870
Bacillota
Dehalobacter sp. CF [CP003870]
2115010
2114935
-
Lys
TTT
[Ensembl]
¡û
>W1610605878
LFSJ01000017
Bacillota
Tepidanaerobacter sp. DTU063 [LFSJ]
12182
12107
-
Lys
TTT
[ENA]
¡û
>W1610606725
LFTE01000085
Bacillota
Peptococcaceae bacterium DTU027 [LFTE]
425
500
+
Lys
TTT
[ENA]
¡û
>W1610783784
LOED01000057
Bacillota
Fervidicola ferrireducens [LOED]
309
234
-
Lys
TTT
[ENA]
¡û
>W1610789594
LOHZ01000030
Bacillota
Thermovenabulum gondwanense [LOHZ]
101441
101366
-
Lys
TTT
[ENA]
¡û
>W1710589645
FRAI01000013
Bacillota
Anaerobranca californiensis DSM 14826 [FRAI]
46421
46496
+
Lys
TTT
[ENA]
¡û
>W1710592699
FRCR01000002
Bacillota
Caldanaerovirga acetigignens [FRCR]
91414
91339
-
Lys
TTT
[ENA]
¡û
>W1710727165
LFSJ01000017
Bacillota
Tepidanaerobacter sp. DTU063 [LFSJ]
12182
12107
-
Lys
TTT
[ENA]
¡û
>W1710728012
LFTE01000085
Bacillota
Peptococcaceae bacterium DTU027 [LFTE]
425
500
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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