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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.308058 (35 seq.)
>WENV180003227
FLNZ01001759
[FLNZ] bioreactor metagenome; Moose rumen
1280
1206
-
Asp
GTC
[ENA]
¢þ
>WENV180381115
OBOR01131472
[OBOR] marine metagenome; ENVO 00002227
135
59
-
Asp
GTC
[ENA]
¢þ
>WENV183704975
PDWI01000841
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
12799
12725
-
Asp
GTC
[ENA]
¢þ
>WENV183707990
PDWI01012062
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1144
1070
-
Asp
GTC
[ENA]
¢þ
>WENV183711250
PDWI01064187
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
108
34
-
Asp
GTC
[ENA]
¢þ
>WENV183719297
PDWJ01011968
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
5661
5735
+
Asp
GTC
[ENA]
¢þ
>WENV183720559
PDWJ01037519
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1082
1008
-
Asp
GTC
[ENA]
¢þ
>WENV183722651
PDWJ01145641
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
1183
1257
+
Asp
GTC
[ENA]
¢þ
>WENV170641868
JFJP01037904
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
10322
10246
-
Asp
GTC
[ENA]
¢þ
>WENV170641869
JFJP01037904
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
10201
10125
-
Asp
GTC
[ENA]
¢þ
>WENV170641870
JFJP01037904
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
10079
10003
-
Asp
GTC
[ENA]
¢þ
>C181004388
AP018042
Bacteroidota
Labilibaculum antarcticum SPP2 [AP018042]
3951484
3951410
-
Asp
GTC
-
¡û
>C181004389
AP018042
Bacteroidota
Labilibaculum antarcticum SPP2 [AP018042]
3951338
3951262
-
Asp
GTC
-
¡û
>C181004390
AP018042
Bacteroidota
Labilibaculum antarcticum SPP2 [AP018042]
3951207
3951131
-
Asp
GTC
-
¡û
>C181004391
AP018042
Bacteroidota
Labilibaculum antarcticum SPP2 [AP018042]
3951076
3951000
-
Asp
GTC
-
¡û
>C181004392
AP018042
Bacteroidota
Labilibaculum antarcticum SPP2 [AP018042]
3950945
3950869
-
Asp
GTC
-
¡û
>W1910812459
MVDD01000026
Bacteroidota
Labilibaculum filiforme 59.16B [MVDD]
749
675
-
Asp
GTC
[ENA]
¡û
>W1910812460
MVDD01000026
Bacteroidota
Labilibaculum filiforme 59.16B [MVDD]
348
272
-
Asp
GTC
[ENA]
¡û
>W1910812511
MVDE01000026
Bacteroidota
Labilibaculum manganireducens 59.10-2M [MVDE]
67745
67669
-
Asp
GTC
[ENA]
¡û
>W1910812512
MVDE01000026
Bacteroidota
Labilibaculum manganireducens 59.10-2M [MVDE]
67614
67538
-
Asp
GTC
[ENA]
¡û
>W1910812525
MVDE01000044
Bacteroidota
Labilibaculum manganireducens 59.10-2M [MVDE]
39255
39329
+
Asp
GTC
[ENA]
¡û
>W1910812526
MVDE01000044
Bacteroidota
Labilibaculum manganireducens 59.10-2M [MVDE]
39396
39472
+
Asp
GTC
[ENA]
¡û
>W1910812527
MVDE01000044
Bacteroidota
Labilibaculum manganireducens 59.10-2M [MVDE]
39527
39603
+
Asp
GTC
[ENA]
¡û
>W1911718313
QQWG01000012
Bacteroidota
Ancylomarina euxinus M1P [QQWG]
601
525
-
Asp
GTC
[ENA]
¡û
>W1911718314
QQWG01000012
Bacteroidota
Ancylomarina euxinus M1P [QQWG]
474
398
-
Asp
GTC
[ENA]
¡û
>W1911718315
QQWG01000012
Bacteroidota
Ancylomarina euxinus M1P [QQWG]
347
271
-
Asp
GTC
[ENA]
¡û
>W1911718316
QQWG01000012
Bacteroidota
Ancylomarina euxinus M1P [QQWG]
220
144
-
Asp
GTC
[ENA]
¡û
>W1911718317
QQWG01000012
Bacteroidota
Ancylomarina euxinus M1P [QQWG]
93
17
-
Asp
GTC
[ENA]
¡û
>W1911718324
QQWG01000020
Bacteroidota
Ancylomarina euxinus M1P [QQWG]
85054
84978
-
Asp
GTC
[ENA]
¡û
>W1911718325
QQWG01000020
Bacteroidota
Ancylomarina euxinus M1P [QQWG]
84927
84851
-
Asp
GTC
[ENA]
¡û
>W1911737934
QTZN01000003
Bacteroidota
Labilibaculum euxinus A4 [QTZN]
334435
334361
-
Asp
GTC
[ENA]
¡û
>W1911737935
QTZN01000003
Bacteroidota
Labilibaculum euxinus A4 [QTZN]
334290
334214
-
Asp
GTC
[ENA]
¡û
>W1911737936
QTZN01000003
Bacteroidota
Labilibaculum euxinus A4 [QTZN]
334159
334083
-
Asp
GTC
[ENA]
¡û
>W1911737937
QTZN01000003
Bacteroidota
Labilibaculum euxinus A4 [QTZN]
334028
333952
-
Asp
GTC
[ENA]
¡û
>W1911737938
QTZN01000003
Bacteroidota
Labilibaculum euxinus A4 [QTZN]
333897
333821
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK