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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.319123 (19 seq.)
>W131169120
AREM01000021
Betaproteobacteria
Oligella ureolytica DSM 18253 [AREM]
448
372
-
Pro
TGG
[ENA]
¡û
>WENV170684210
LFRM01026329
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
617
541
-
Pro
TGG
[ENA]
¢þ
>WENV170687775
LFRM01210640
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
658
734
+
Pro
TGG
[ENA]
¢þ
>WENV170691267
LFRM01388969
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
10444
10520
+
Pro
TGG
[ENA]
¢þ
>WENV170721862
LSQX01206574
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
49597
49521
-
Pro
TGG
[ENA]
¢þ
>WENV170726148
LSQX01369038
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
11089
11165
+
Pro
TGG
[ENA]
¢þ
>C181049095
CP021060
Betaproteobacteria
Taylorella equigenitalis 92-0972 [CP021060]
1312196
1312120
-
Pro
TGG
-
¡û
>C181049960
CP021199
Betaproteobacteria
Taylorella equigenitalis 89-0490 [CP021199]
1295375
1295299
-
Pro
TGG
-
¡û
>C181049997
CP021200
Betaproteobacteria
Taylorella equigenitalis 79-1587 [CP021200]
1378326
1378250
-
Pro
TGG
-
¡û
>C181050034
CP021201
Betaproteobacteria
Taylorella equigenitalis 09-0932 [CP021201]
1278502
1278426
-
Pro
TGG
-
¡û
>C181050116
CP021246
Betaproteobacteria
Taylorella equigenitalis 98-0554 [CP021246]
1332325
1332249
-
Pro
TGG
-
¡û
>C191208083
LR134346
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 NCTC11184 [LR134346]
1340782
1340706
-
Pro
TGG
-
¡û
>W141562678
JHZJ01000004
Betaproteobacteria
Brackiella oedipodis DSM 13743 [JHZJ]
98105
98029
-
Pro
TGG
[ENA]
¡û
>W1810701958
QMFX01000002
Betaproteobacteria
Taylorella equigenitalis 210217RC10635 [QMFX]
158721
158797
+
Pro
TGG
[ENA]
¡û
>W1511350694
JRMO01000002
Betaproteobacteria
Taylorella equigenitalis MCE529 [JRMO]
253789
253713
-
Pro
TGG
[ENA]
¡û
>C11122634
CP002456
Betaproteobacteria
Taylorella equigenitalis MCE9 [CP002456]
288484
288408
-
Pro
TGG
[Ensembl]
¡û
>C121009946
CP003264
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 [CP003264]
1371390
1371314
-
Pro
TGG
[Ensembl]
¡û
>W1610606585
LFTA01000240
Betaproteobacteria
Alcaligenaceae bacterium DTU041 [LFTA]
10444
10520
+
Pro
TGG
[ENA]
¡û
>W1710727872
LFTA01000240
Betaproteobacteria
Alcaligenaceae bacterium DTU041 [LFTA]
10444
10520
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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