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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.339835 (28 seq.)
>A171002257
CP002772
Euryarchaeota
Methanobacterium paludis SWAN1 [CP002772]
2297216
2297143
-
Cys
GCA
-
¡û
>A171003999
CP006933
Euryarchaeota
Methanobacterium formicicum BRM9 [CP006933]
2229731
2229658
-
Cys
GCA
-
¡û
>A171007325
HG425166
Euryarchaeota
Methanobacterium sp. MB1 [HG425166]
1801410
1801337
-
Cys
GCA
-
¡û
>A171007374
LN515531
Euryarchaeota
Methanobacterium formicicum [LN515531]
1089151
1089078
-
Cys
GCA
-
¡û
>A171007408
LN734822
Euryarchaeota
Methanobacterium formicicum [LN734822]
2230097
2230024
-
Cys
GCA
-
¡û
>A171007673
LT607756
Euryarchaeota
Methanobacterium congolense [LT607756]
2201796
2201724
-
Cys
GCA
-
¡û
>WENV181229977
OFEK01000155
[OFEK] activated sludge metagenome; Anaerobic digester
63307
63234
-
Cys
GCA
[ENA]
¢þ
>WENV170021407
BBPF01009027
[BBPF] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
2483
2410
-
Cys
GCA
[ENA]
¢þ
>WENV170634968
JAHE01154467
[JAHE] sediment metagenome; lake sediment
481
408
-
Cys
GCA
[ENA]
¢þ
>WENV170668834
LAHQ01061972
[LAHQ] activated sludge metagenome; sample C-2; Sludge from acidogenic chamber (second chamber) of Anaerobic Baffled Reactor over
305
232
-
Cys
GCA
[ENA]
¢þ
>WENV170670993
LAHU01007473
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
151
78
-
Cys
GCA
[ENA]
¢þ
>WENV170671147
LAHU01019053
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
444
517
+
Cys
GCA
[ENA]
¢þ
>WENV170677324
LDZT01004945
[LDZT] terrestrial metagenome; oil reservoir sample SB1
10594
10521
-
Cys
GCA
[ENA]
¢þ
>WENV170972775
MTKX01051855
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1264
1337
+
Cys
GCA
[ENA]
¢þ
>WENV170978096
MTKZ01040472
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
4227
4300
+
Cys
GCA
[ENA]
¢þ
>W1910574930
JQJK01000015
Euryarchaeota
Methanobacterium veterum MK4 [JQJK]
73149
73078
-
Cys
GCA
[ENA]
¡û
>W1910574969
JQKN01000013
Euryarchaeota
Methanobacterium arcticum M2 [JQKN]
10488
10417
-
Cys
GCA
[ENA]
¡û
>W1910575106
JQLY01000001
Euryarchaeota
Methanobacterium sp. SMA-27 [JQLY]
2211016
2210945
-
Cys
GCA
[ENA]
¡û
>W1910635134
LMVM01000012
Euryarchaeota
Methanobacterium bryantii M.o.H. [LMVM]
558781
558710
-
Cys
GCA
[ENA]
¡û
>W1910655471
LZPM01000042
Euryarchaeota
Methanobacterium sp. A39 [LZPM]
130105
130034
-
Cys
GCA
[ENA]
¡û
>W1910938901
NIZT01000038
Euryarchaeota
Candidatus Methanobinarius endosymbioticus NOE [NIZT]
30017
29946
-
Cys
GCA
[ENA]
¡û
>W1610006225
AMGN01000010
Euryarchaeota
Methanobacterium sp. Maddingley MBC34 [AMGN]
45493
45420
-
Cys
GCA
[ENA]
¡û
>W1610011005
AMPO01000001
Euryarchaeota
Methanobacterium formicicum DSM 3637 [AMPO]
87502
87431
-
Cys
GCA
[ENA]
¡û
>W1610049135
BBES01000001
Euryarchaeota
Methanobacterium formicicum JCM 10132 [BBES]
74709
74636
-
Cys
GCA
[ENA]
¡û
>W1610613878
LGGL01000052
Euryarchaeota
Methanobacterium sp. 42_16 [LGGL]
10594
10521
-
Cys
GCA
[ENA]
¡û
>W1610990690
LWMT01000284
Euryarchaeota
Methanobrevibacter filiformis DSM 11501 [LWMT]
3861
3790
-
Cys
GCA
[ENA]
¡û
>W1610990741
LWMV01000187
Euryarchaeota
Methanobrevibacter curvatus DSM 11111 [LWMV]
14737
14808
+
Cys
GCA
[ENA]
¡û
>W1610990766
LWMW01000087
Euryarchaeota
Methanobrevibacter cuticularis DSM 11139 [LWMW]
24652
24723
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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