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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.349442 (31 seq.)
>C171064245
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2589981
2590055
+
Asn
GTT
-
¡û
>C171064273
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2618145
2618219
+
Asn
GTT
-
¡û
>C171064289
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
2953521
2953595
+
Asn
GTT
-
¡û
>C171064309
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
716313
716239
-
Asn
GTT
-
¡û
>C171064318
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
709840
709766
-
Asn
GTT
-
¡û
>C171064343
CP017603
Bacillota
Clostridium formicaceticum ATCC 27076 [CP017603]
696072
695998
-
Asn
GTT
-
¡û
>C171109192
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1395807
1395881
+
Asn
GTT
-
¡û
>C171109220
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1423970
1424044
+
Asn
GTT
-
¡û
>C171109236
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
1759346
1759420
+
Asn
GTT
-
¡û
>C171109251
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4108865
4108791
-
Asn
GTT
-
¡û
>C171109260
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4102392
4102318
-
Asn
GTT
-
¡û
>C171109285
CP020559
Bacillota
Clostridium formicaceticum DSM 92 [CP020559]
4088624
4088550
-
Asn
GTT
-
¡û
>WENV180297473
OBJA01034467
[OBJA] soil metagenome; sediment, water from around vicinity
622
696
+
Asn
GTT
[ENA]
¢þ
>WENV170674845
LCWY01009847
[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
628
554
-
Asn
GTT
[ENA]
¢þ
>WENV170675148
LCWZ01009582
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
683
757
+
Asn
GTT
[ENA]
¢þ
>WENV170675203
LCWZ01015868
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
97
171
+
Asn
GTT
[ENA]
¢þ
>WENV170675432
LCWZ01071815
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
97
171
+
Asn
GTT
[ENA]
¢þ
>WENV170675500
LCWZ01096593
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
171
245
+
Asn
GTT
[ENA]
¢þ
>W1910548216
FZOJ01000008
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
186990
186916
-
Asn
GTT
[ENA]
¡û
>W1910548232
FZOJ01000008
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
175943
175869
-
Asn
GTT
[ENA]
¡û
>W1910548256
FZOJ01000036
Bacillota
Anaerovirgula multivorans SCA [FZOJ]
21
95
+
Asn
GTT
[ENA]
¡û
>C151057224
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
1166555
1166629
+
Asn
GTT
[Ensembl]
¡û
>C151057241
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
1178094
1178168
+
Asn
GTT
[Ensembl]
¡û
>C151057256
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
1597387
1597461
+
Asn
GTT
[Ensembl]
¡û
>C151057269
CP009687
Bacillota
Clostridium aceticum DSM 1496 [CP009687]
3724791
3724717
-
Asn
GTT
[Ensembl]
¡û
>W1511527527
JYHU01000004
Bacillota
Clostridium aceticum DSM 1496 [JYHU]
266547
266621
+
Asn
GTT
[ENA]
¡û
>W1710506681
FMUS01000030
Bacillota
Alkaliphilus peptidifermentans DSM 18978 [FMUS]
566
640
+
Asn
GTT
[ENA]
¡û
>W1710520418
FNFP01000002
Bacillota
Natronincola ferrireducens [FNFP]
550225
550151
-
Asn
GTT
[ENA]
¡û
>W1710520430
FNFP01000002
Bacillota
Natronincola ferrireducens [FNFP]
541784
541710
-
Asn
GTT
[ENA]
¡û
>W1710531805
FNPV01000001
Bacillota
Tindallia californiensis [FNPV]
454476
454402
-
Asn
GTT
[ENA]
¡û
>W1710563836
FOQA01000006
Bacillota
Tindallia magadiensis [FOQA]
242719
242645
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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